myRT

myRT report for GCA_000799755.1_ASM79975v1

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Seq: JUHI01000027.1 Rhizobium tropici strain PTD1 EX06DRAFT_scaffold00027.27_C, whole genome shotgun sequence (82090 bp)
Overview 1 RT 1: 31605-34447 bp Neighborhood of RT #1 [31605, 34447] Rve RVT-GII GIIM Feature: gene Location: 31605-31742 bp Feature: gene Location: 31928-32416 bp Feature: domain Description: Rve Location: 31958-32366 bp Feature: domain Description: Rve Location: 31 958-32366 bp Feature: gene Location: 32455-33714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32659-33313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32659-3331 3 bp Feature: domain Description: GIIM Note: maturase Location: 33397-33625 bp Feature: domain Description: GIIM Note: maturase Location: 33397-33625 bp Feature: gene Location: 33644-34000 bp Feature: gene Location: 34208-34447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388)

Seq: JUHI01000030.1 Rhizobium tropici strain PTD1 EX06DRAFT_scaffold00030.30_C, whole genome shotgun sequence (52767 bp)
Overview 1 RT 1: 141-12365 bp Neighborhood of RT #1 [141, 12382] RVT-Retrons HTH_XRE RVT-AbiP2 Mrr_cat COG3183 Feature: gene Location: 141-431 bp Feature: gene Location: 709-1632 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 760-1267 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 760-12 67 bp Feature: gene Location: 1751-2113 bp Feature: domain Description: HTH_XRE Location: 1826-1988 bp Feature: domain Description: HTH_XRE Location: 182 6-1988 bp Feature: gene Location: 2674-6471 bp Feature: gene Location: 7245-7463 bp Feature: gene Location: 7547-7927 bp Feature: gene Location: 8740-10236 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 9157-9604 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 9157-9604 bp Feature: gene Location: 10233-11099 bp Feature: domain Description: Mrr_cat Location: 10689-11001 bp Feature: domain Description: Mrr_cat Location: 10689-11001 bp Feature: gene Location: 11480-12382 bp Feature: domain Description: COG3183 Location: 12062-12365 bp Feature: domain Description: COG3183 Location: 12 062 -12 365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), RVT-AbiP2, Mrr_cat (pfam04471), COG3183 (Predicted restriction endonuclease, HNH family )

Seq: JUHI01000073.1 Rhizobium tropici strain PTD1 EX06DRAFT_scaffold00073.73_C, whole genome shotgun sequence (1076 bp)
Overview 1 RT 1: 2-984 bp Neighborhood of RT #1 [2, 1061] RVT-GII Feature: gene Location: 2-130 bp Feature: gene Location: 642-1061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 858-984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 858-984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII