myRT

myRT report for GCA_000799905.1_ASM79990v1

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Seq: JUHP01000007.1 Agrobacterium rhizogenes strain YR530 EX10DRAFT_scaffold00006.6_C, whole genome shotgun sequence (467522 bp)
Overview 1 RT 1: 224661-228265 bp Neighborhood of RT #1 [224661, 228315] Crp Rve RVT-GII GIIM Rve Feature: gene Location: 224661-225353 bp Feature: domain Description: Crp Location: 224691-225297 bp Feature: domain Description: Crp Location: 224691 -225297 bp Feature: gene Location: 225752-226237 bp Feature: domain Description: Rve Location: 225782-226163 bp Feature: domain Description: Rve Location: 225782-2261 63 bp Feature: gene Location: 226276-227535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226480-227137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226480-2271 37 bp Feature: domain Description: GIIM Note: maturase Location: 227218-227449 bp Feature: domain Description: GIIM Note: maturase Location: 22721 8-227449 bp Feature: gene Location: 227645-227821 bp Feature: gene Location: 228019-228315 bp Feature: domain Description: Rve Location: 228046-228265 bp Feature: domain Description: Rve Location: 228046-228265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Crp (pfam00325), Rve (COG3316), RVT-GII, GIIM (pfam08388)

Seq: JUHP01000021.1 Agrobacterium rhizogenes strain YR530 EX10DRAFT_scaffold00020.20_C, whole genome shotgun sequence (32184 bp)
Overview 1 RT 1: 7725-15157 bp Neighborhood of RT #1 [7725, 15792] MDR_like_2 RVT-Retrons DEXQc_UvrD DEXQc_UvrD YbjD YbjD Feature: gene Location: 7725-7913 bp Feature: domain Description: MDR_like_2 Location: 7746-7899 bp Feature: domain Description: MDR_like_2 Location: 7746-7899 bp Feature: gene Location: 9267-9539 bp Feature: gene Location: 9763-11535 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9925-10558 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 992 5-10558 bp Feature: gene Location: 11708-13723 bp Feature: domain Description: DEXQc_UvrD Location: 11855-12092 bp Feature: domain Description: DEXQc_UvrD Location: 11855-12 092 bp Feature: domain Description: DEXQc_UvrD Location: 12278-12551 bp Feature: domain Description: DEXQc_UvrD Location: 12 2 78-12 551 bp Feature: gene Location: 13723-15792 bp Feature: domain Description: YbjD Location: 13726-14014 bp Feature: domain Description: YbjD Location: 1372 6-14014 bp Feature: domain Description: YbjD Location: 14569-15157 bp Feature: domain Description: YbjD Location: 14569-15157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MDR_like_2 (cd05289), RVT-Retrons, DEXQc_UvrD (cd17932), YbjD (COG3593)

Seq: JUHP01000022.1 Agrobacterium rhizogenes strain YR530 EX10DRAFT_scaffold00021.21_C, whole genome shotgun sequence (23685 bp)
Overview 1 RT 1: 7008-16794 bp Neighborhood of RT #1 [7008, 16794] COG3464 PRK09182 dnaG RVT-UG10 RVT-UG10 DUF4231 Feature: gene Location: 7008-7280 bp Feature: domain Description: COG3464 Location: 7032-7260 bp Feature: domain Description: COG3 464 Location: 703 2-7260 bp Feature: gene Location: 7371-8258 bp Feature: domain Description: PRK09182 Location: 7380-8250 bp Feature: domain Description: PRK09182 Location: 73 80-8250 bp Feature: gene Location: 8273-15706 bp Feature: domain Description: dnaG Location: 8291-9452 bp Feature: domain Description: dnaG Location: 8291-9452 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 10163-10322 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 10163 -103 22 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 10511-10781 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 10511-10781 bp Feature: gene Location: 15890-16366 bp Feature: domain Description: DUF4231 Location: 15998-16199 bp Feature: domain Description: DUF423 1 Location: 15998-16199 bp Feature: gene Location: 16396-16794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), PRK09182 (DNA polymerase III subunit epsilon; Validated), dnaG (TIGR01391), RVT-UG10, DUF4231 (pfam14015)