myRT

myRT report for GCA_000800035.1_ASM80003v1

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Seq: JUGS01000009.1 Agrobacterium rhizogenes strain CF262 EW86DRAFT_scaffold00002.2_C, whole genome shotgun sequence (966551 bp)
Overview 1 RT 1: 239551-243149 bp Neighborhood of RT #1 [239551, 243205] Rve RVT-GII GIIM Rve Crp Feature: gene Location: 239551-239847 bp Feature: domain Description: Rve Location: 239578-239797 bp Feature: domain Description: Rve Location: 239578-239797 bp Feature: gene Location: 240045-240221 bp Feature: gene Location: 240286-241590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240535-241192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240535-241 1 92 bp Feature: domain Description: GIIM Note: maturase Location: 241273-241504 bp Feature: domain Description: GIIM Note: maturase Location: 241 273-241 504 bp Feature: gene Location: 241629-242114 bp Feature: domain Description: Rve Location: 241659-242040 bp Feature: domain Description: Rve Location: 241 659-242040 bp Feature: gene Location: 242513-243205 bp Feature: domain Description: Crp Location: 242543-243149 bp Feature: domain Description: Crp Location: 242543-2431 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388), Crp (pfam00325)

Seq: JUGS01000016.1 Agrobacterium rhizogenes strain CF262 EW86DRAFT_scaffold00009.9_C, whole genome shotgun sequence (142181 bp)
Overview 1 RT 1: 43492-46292 bp Neighborhood of RT #1 [43492, 46292] Arc RVT-Retrons Feature: gene Location: 43492-43644 bp Feature: gene Location: 43725-44123 bp Feature: domain Description: Arc Location: 43749-43869 bp Feature: domain Description: Arc Location: 43749-43869 bp Feature: gene Location: 44193-45176 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44298-44883 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 442 98-44883 bp Feature: gene Location: 45178-45942 bp Feature: gene Location: 46122-46292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arc (pfam03869), RVT-Retrons

Seq: JUGS01000001.1 Agrobacterium rhizogenes strain CF262 EW86DRAFT_scaffold00010.10_C, whole genome shotgun sequence (133669 bp)
Overview 1 RT 1: 59841-64844 bp Neighborhood of RT #1 [59841, 65071] AroA COG4530 RVT-Retrons HTH_XRE INT_Rci_Hp1_C Feature: gene Location: 59841-61205 bp Feature: domain Description: AroA Location: 59880-61176 bp Feature: domain Description: AroA Location: 59880-61176 bp Feature: gene Location: 61439-61858 bp Feature: domain Description: COG4530 Location: 61481-61856 bp Feature: domain Description: COG453 0 Location: 61481-61856 bp Feature: gene Location: 62194-63099 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62341-62875 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 623 41-62875 bp Feature: gene Location: 63100-63390 bp Feature: domain Description: HTH_XRE Location: 63112-63271 bp Feature: domain Description: HTH_XRE Location: 63 112-63 271 bp Feature: gene Location: 63965-65071 bp Feature: domain Description: INT_Rci_Hp1_C Location: 64463-64844 bp Feature: domain Description: INT_Rci_Hp1_C Location: 64463 -64844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AroA (COG0128), COG4530 (Uncharacterized protein ), RVT-Retrons, HTH_XRE (smart00530), INT_Rci_Hp1_C (cd00796)

Seq: JUGS01000002.1 Agrobacterium rhizogenes strain CF262 EW86DRAFT_scaffold00011.11_C, whole genome shotgun sequence (95643 bp)
Overview 1 RT 1: 63937-67268 bp Neighborhood of RT #1 [63937, 67300] Tra5 RVT-GII GIIM PHA02517 Feature: gene Location: 63937-64158 bp Feature: gene Location: 64189-64566 bp Feature: domain Description: Tra5 Location: 64201-64555 bp Feature: domain Description: Tra5 Location: 64 201-64 555 bp Feature: gene Location: 64715-66244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64988-65723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 988-65723 bp Feature: domain Description: GIIM Note: maturase Location: 65795-66023 bp Feature: domain Description: GIIM Note: maturase Location: 65795-66023 bp Feature: gene Location: 66413-66619 bp Feature: gene Location: 66860-67300 bp Feature: domain Description: PHA02517 Location: 66926-67268 bp Feature: domain Description: PHA02517 Location: 66926-67268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)