myRT

myRT report for GCA_000801795.1_PfAU6026

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Seq: JRXU01000005.1 Pseudomonas fluorescens strain AU6026 Scaffold_120, whole genome shotgun sequence (198273 bp)
Overview 1 RT 1: 166964-172215 bp Neighborhood of RT #1 [166964, 172235] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C ACR3 Feature: gene Location: 166964-167299 bp Feature: domain Description: TnpB_IS66 Location: 166982-167270 bp Feature: domain Description: TnpB_IS66 Location: 1 66982-1 67270 bp Feature: gene Location: 167361-168689 bp Feature: domain Description: LZ_Tnp_IS66 Location: 167493-167700 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 67493-1 67700 bp Feature: domain Description: zf-IS66 Location: 167739-167853 bp Feature: domain Description: zf-IS66 Location: 1 67739-1 67853 bp Feature: domain Description: DDE_Tnp_IS66 Location: 167895-168669 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 67895-1 68669 bp Feature: gene Location: 169247-170908 bp Feature: RT Description: RVT_N Location: 169292-169535 bp Feature: RT Description: RVT_N Location: 1 69292-1 69535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169580-170216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 69580-1 7021 6 bp Feature: domain Description: GIIM Note: maturase Location: 170273-170501 bp Feature: domain Description: GIIM Note: maturase Location: 1 70273-1 70501 bp Feature: gene Location: 171100-171234 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 171106-171217 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 71 1 06-1 71 21 7 bp Feature: gene Location: 171273-172235 bp Feature: domain Description: ACR3 Location: 171288-172215 bp Feature: domain Description: ACR3 Location: 1 71 288-1 7221 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), ACR3 (COG0798)

Seq: JRXU01000018.1 Pseudomonas fluorescens strain AU6026 Scaffold_160, whole genome shotgun sequence (465080 bp)
Overview 1 RT 1: 35810-38980 bp Neighborhood of RT #1 [35810, 38980] Avd_like RVT-DGRs Feature: gene Location: 35810-36403 bp Feature: gene Location: 36462-36815 bp Feature: domain Description: Avd_like Location: 36489-36795 bp Feature: domain Description: Avd_like Location: 36489-36795 bp Feature: gene Location: 37028-38185 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 37277-38033 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 372 77-38033 bp Feature: gene Location: 38227-38676 bp Feature: gene Location: 38741-38980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: JRXU01000020.1 Pseudomonas fluorescens strain AU6026 Scaffold_250, whole genome shotgun sequence (221165 bp)
Overview 1 RT 1: 141557-147441 bp Neighborhood of RT #1 [141557, 147461] RVT-GII GlxA MFS_ProP Feature: gene Location: 141557-141706 bp Feature: gene Location: 142298-142465 bp Feature: gene Location: 142576-144342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143260-143950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143 260-143 950 bp Feature: gene Location: 145069-146088 bp Feature: domain Description: GlxA Location: 145135-146074 bp Feature: domain Description: GlxA Location: 14513 5-146074 bp Feature: gene Location: 146175-147461 bp Feature: domain Description: MFS_ProP Location: 146214-147441 bp Feature: domain Description: MFS_ProP Location: 146214-147441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GlxA (COG4977), MFS_ProP (cd17366)