myRT

myRT report for GCA_000801875.1_PfAU14440

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Seq: JRXX01000093.1 Pseudomonas fluorescens strain AU14440 Scaffold_280, whole genome shotgun sequence (61845 bp)
Overview 1 RT 1: 40537-44597 bp Neighborhood of RT #1 [40537, 44597] GlxA RVT-GII Feature: gene Location: 40537-41556 bp Feature: domain Description: GlxA Location: 40603-41542 bp Feature: domain Description: GlxA Location: 40603-41 542 bp Feature: gene Location: 41849-41983 bp Feature: gene Location: 42253-44049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42967-43657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42967-43657 bp Feature: gene Location: 44160-44327 bp Feature: gene Location: 44463-44597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlxA (COG4977), RVT-GII

Seq: JRXX01000089.1 Pseudomonas fluorescens strain AU14440 Scaffold_360, whole genome shotgun sequence (186357 bp)
Overview 1 RT 1: 28476-33727 bp Neighborhood of RT #1 [28476, 33747] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C ACR3 Feature: gene Location: 28476-28811 bp Feature: domain Description: TnpB_IS66 Location: 28494-28782 bp Feature: domain Description: TnpB_IS66 Location: 2 8494-2 8782 bp Feature: gene Location: 28873-30201 bp Feature: domain Description: LZ_Tnp_IS66 Location: 29005-29212 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 9005-2 92 12 bp Feature: domain Description: zf-IS66 Location: 29251-29365 bp Feature: domain Description: zf-IS66 Location: 2 92 51-2 9365 bp Feature: domain Description: DDE_Tnp_IS66 Location: 29407-30181 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 9407-30181 bp Feature: gene Location: 30759-32420 bp Feature: RT Description: RVT_N Location: 30804-31047 bp Feature: RT Description: RVT_N Location: 30804-31047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31092-31728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31092 -3172 8 bp Feature: domain Description: GIIM Note: maturase Location: 31785-32013 bp Feature: domain Description: GIIM Note: maturase Location: 31785-32 013 bp Feature: gene Location: 32612-32746 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 32618-32729 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 32 618-32 72 9 bp Feature: gene Location: 32785-33747 bp Feature: domain Description: ACR3 Location: 32800-33727 bp Feature: domain Description: ACR3 Location: 32 800-3372 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), ACR3 (COG0798)

Seq: JRXX01000036.1 Pseudomonas fluorescens strain AU14440 Scaffold_370, whole genome shotgun sequence (70342 bp)
Overview 1 RT 1: 57637-61393 bp Neighborhood of RT #1 [57637, 61410] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 57637-58029 bp Feature: gene Location: 58075-58998 bp Feature: domain Description: Dcm Location: 58081-58702 bp Feature: domain Description: Dcm Location: 58081-58702 bp Feature: domain Description: Dcm Location: 58837-58981 bp Feature: domain Description: Dcm Location: 5883 7-58981 bp Feature: gene Location: 59006-60124 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59216-59969 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59216-59969 bp Feature: gene Location: 60379-60735 bp Feature: domain Description: Avd_like Location: 60406-60715 bp Feature: domain Description: Avd_like Location: 60406-60715 bp Feature: gene Location: 60790-61410 bp Feature: domain Description: DUF1566 Location: 61030-61393 bp Feature: domain Description: DUF1566 Location: 6103 0-613 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: JRXX01000082.1 Pseudomonas fluorescens strain AU14440 Scaffold_560, whole genome shotgun sequence (67462 bp)
Overview 1 RT 1: 49613-52461 bp Neighborhood of RT #1 [49613, 52541] Avd_like RVT-DGRs Dam Feature: gene Location: 49613-49966 bp Feature: domain Description: Avd_like Location: 49640-49946 bp Feature: domain Description: Avd_like Location: 4 964 0-4 994 6 bp Feature: gene Location: 50239-50481 bp Feature: gene Location: 50589-51440 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50595-51291 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50595-51291 bp Feature: gene Location: 51486-51629 bp Feature: gene Location: 51645-52541 bp Feature: domain Description: Dam Location: 51705-52461 bp Feature: domain Description: Dam Location: 51705-524 61 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, Dam (pfam05869)