myRT

myRT report for GCA_000802035.2_cluster_c5

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Seq: JUEC02000080.1 (155066 bp)
Overview 1 RT 1: 101046-106314 bp Neighborhood of RT #1 [101046, 106445] FACL_FadD13-like RVT-UG17 SLATT_5 INT_Rci_Hp1_C Feature: gene Location: 101046-102593 bp Ori: KJS74231.1 Feature: domain Description: FACL_FadD13-like Location: 101073-102543 bp Feature: domain Description: FACL_FadD1 3-like Location: 1 01 073-1 02543 bp Feature: gene Location: 102908-103096 bp Feature: gene Location: 103202-104566 bp Ori: KJS74233.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 103430-104033 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 03430-1 04033 bp Feature: gene Location: 104566-105165 bp Ori: KJS74234.2 Feature: domain Description: SLATT_5 Location: 104629-105130 bp Feature: domain Description: SLATT_5 Location: 1 04629-1 051 30 bp Feature: gene Location: 105576-106445 bp Ori: KJS74235.1 Feature: domain Description: INT_Rci_Hp1_C Location: 105855-106314 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 1 05855-1 0631 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FACL_FadD13-like (cd17631), RVT-UG17, SLATT_5 (pfam18160), INT_Rci_Hp1_C (cd00796)

Seq: JUEC02000134.1 (16184 bp)
Overview 1 RT 1: 12566-16184 bp Neighborhood of RT #1 [12566, 16184] ParB RepB PRK11235 RVT-UG2 Feature: gene Location: 12566-13471 bp Ori: KJS70086.1 Feature: domain Description: ParB Location: 12608-12851 bp Feature: domain Description: ParB Location: 12 608-12 851 bp Feature: domain Description: RepB Location: 12878-13415 bp Feature: domain Description: RepB Location: 12 878-13415 bp Feature: gene Location: 13513-13752 bp Ori: KJS70087.1 Feature: domain Description: PRK11235 Location: 13516-13750 bp Feature: domain Description: PRK112 35 Location: 13516-13750 bp Feature: gene Location: 13926-15209 bp Ori: KJS70088.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 14118-14904 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 14118-14904 bp Feature: gene Location: 15968-16184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParB (smart00470), RepB (pfam07506), PRK11235 (type II toxin-antitoxin system RelB/DinJ family antitoxin), RVT-UG2

Seq: JUEC02000108.1 (7018 bp)
Overview 1 RT 1: 259-6133 bp Neighborhood of RT #1 [259, 6133] HTH_XRE RVT-GII GIIM DotA_TraY Feature: gene Location: 259-459 bp Ori: KJS71600.1 Feature: domain Description: HTH_XRE Location: 262-394 bp Feature: domain Description: HTH_XRE Location: 262-3 94 bp Feature: gene Location: 693-1028 bp Feature: gene Location: 1169-2590 bp Ori: KJS71602.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1526-2141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1526-2141 bp Feature: domain Description: GIIM Note: maturase Location: 2198-2411 bp Feature: domain Description: GIIM Note: maturase Location: 2198-2411 bp Feature: gene Location: 3059-5323 bp Ori: KJS71603.1 Feature: domain Description: DotA_TraY Location: 3173-5105 bp Feature: domain Description: DotA_TraY Location: 3 173 -5105 bp Feature: gene Location: 5636-6133 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII, GIIM (pfam08388), DotA_TraY (TIGR04346)

Seq: JUEC02000035.1 (64820 bp)
Overview 1 RT 1: 30759-38417 bp Neighborhood of RT #1 [30759, 38417] COG4889 RVT-Retrons HTH_XRE HTH_XRE Feature: gene Location: 30759-35630 bp Ori: KJS78302.1 Feature: domain Description: COG4889 Location: 30762-35610 bp Feature: domain Description: COG4 889 Location: 30762-35610 bp Feature: gene Location: 36040-36294 bp Feature: gene Location: 36370-37413 bp Ori: KJS78304.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36508-37075 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36508-37075 bp Feature: gene Location: 37559-37861 bp Ori: KJS78305.1 Feature: domain Description: HTH_XRE Location: 37583-37637 bp Feature: domain Description: HTH_XRE Location: 37583-37637 bp Feature: domain Description: HTH_XRE Location: 37649-37739 bp Feature: domain Description: HTH_XRE Location: 3764 9-37739 bp Feature: gene Location: 37956-38417 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4889 (Predicted helicase ), RVT-Retrons, HTH_XRE (smart00530)

Seq: JUEC02000054.1 (6101 bp)
Overview 1 RT 1: 1-5121 bp Neighborhood of RT #1 [1, 5273] cysJ SiR_like1 Fiu RVT-GII GIIM Feature: gene Location: 1-1212 bp Ori: KJS77029.1 Feature: domain Description: cysJ Location: 7-268 bp Feature: domain Description: cysJ Location: 7-268 bp Feature: domain Description: SiR_like1 Location: 322-1210 bp Feature: domain Description: SiR_like1 Location: 322-1210 bp Feature: gene Location: 1512-3563 bp Ori: KJS77031.1 Feature: domain Description: Fiu Location: 1554-3561 bp Feature: domain Description: Fiu Location: 15 5 4-35 61 bp Feature: gene Location: 3888-5273 bp Ori: KJS77030.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4239-4851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4239-485 1 bp Feature: domain Description: GIIM Note: maturase Location: 4914-5121 bp Feature: domain Description: GIIM Note: maturase Location: 4914-5 121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cysJ (TIGR01931), SiR_like1 (cd06200), Fiu (COG4774), RVT-GII, GIIM (pfam08388)