myRT

myRT report for GCA_000805835.1_ASM80583v1

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Seq: JTCO01000106.1 (11236 bp)
Overview 1 RT 1: 103-5852 bp Neighborhood of RT #1 [103, 5852] HTH_23 InsE RVT-GII DDE_Tnp_1 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 103-771 bp Feature: domain Description: HTH_23 Location: 211-298 bp Feature: domain Description: HTH_23 Location: 21 1 -298 bp Feature: domain Description: InsE Location: 427-622 bp Feature: domain Description: InsE Location: 427-622 bp Feature: gene Location: 865-1125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868-1099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868-1 099 bp Feature: gene Location: 1135-1563 bp Feature: gene Location: 1577-2164 bp Feature: domain Description: DDE_Tnp_1 Location: 1583-2132 bp Feature: domain Description: DDE_Tnp_1 Location: 1 583-21 32 bp Feature: gene Location: 3124-3318 bp Feature: gene Location: 3376-3597 bp Feature: gene Location: 3630-5303 bp Feature: domain Description: RVT_N Location: 3678-3921 bp Feature: domain Description: RVT_N Location: 3678-3921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3966-4611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3966-461 1 bp Feature: domain Description: GIIM Note: maturase Location: 4665-4896 bp Feature: domain Description: GIIM Note: maturase Location: 4665-4896 bp Feature: domain Description: HNHc Note: nucleases Location: 5097-5256 bp Feature: domain Description: HNHc Note: nucleases Location: 5097-5256 bp Feature: gene Location: 5460-5594 bp Feature: gene Location: 5658-5852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), InsE (COG2963), RVT-GII, DDE_Tnp_1 (pfam01609), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507)

Seq: JTCO01000165.1 (5160 bp)
Overview 1 RT 1: 2065-4830 bp Neighborhood of RT #1 [2065, 4847] RVT-GII GIIM RVT-GII Tra5 Feature: gene Location: 2065-2307 bp Feature: gene Location: 2479-2634 bp Feature: gene Location: 2660-3187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2666-2810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 666-2 810 bp Feature: domain Description: GIIM Note: maturase Location: 2894-3110 bp Feature: domain Description: GIIM Note: maturase Location: 2 894-3110 bp Feature: gene Location: 3197-3469 bp Feature: gene Location: 3486-4613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3786-4443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3786-4443 bp Feature: gene Location: 4626-4847 bp Feature: domain Description: Tra5 Location: 4638-4830 bp Feature: domain Description: Tra5 Location: 4638-4830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801)

Seq: JTCO01000154.1 (7140 bp)
Overview 1 RT 1: 2-2698 bp Neighborhood of RT #1 [2, 2712] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 2-241 bp Feature: gene Location: 805-1938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 907-1561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 907-1561 bp Feature: domain Description: GIIM Note: maturase Location: 1639-1861 bp Feature: domain Description: GIIM Note: maturase Location: 163 9-1861 bp Feature: gene Location: 2054-2200 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2066-2177 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2066-2177 bp Feature: gene Location: 2227-2712 bp Feature: domain Description: COG3547 Location: 2245-2698 bp Feature: domain Description: COG3 547 Location: 2245-2698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: JTCO01000142.1 (68003 bp)
Overview 1 RT 1: 28210-32090 bp Neighborhood of RT #1 [28210, 32095] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 28210-28668 bp Feature: domain Description: dut Location: 28216-28663 bp Feature: domain Description: dut Location: 28216-28663 bp Feature: gene Location: 28775-29371 bp Feature: domain Description: slmA Location: 28781-29357 bp Feature: domain Description: slmA Location: 28781-29357 bp Feature: gene Location: 29417-30376 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29552-30101 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29552-30101 bp Feature: gene Location: 30672-31328 bp Feature: domain Description: pyrE Location: 30690-31323 bp Feature: domain Description: pyrE Location: 30690-31323 bp Feature: gene Location: 31379-32095 bp Feature: domain Description: rph Location: 31382-32090 bp Feature: domain Description: rph Location: 31382-32090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: JTCO01000080.1 (19891 bp)
Overview 1 RT 1: 57-4101 bp Neighborhood of RT #1 [57, 4145] RVT-UG5 PRK09692 Feature: gene Location: 57-1961 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 63-222 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 63-222 bp Feature: gene Location: 2249-2797 bp Feature: gene Location: 2889-4145 bp Feature: domain Description: PRK09692 Location: 2898-4101 bp Feature: domain Description: PRK09692 Location: 2898-4101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, PRK09692 (Integrase; provisional)