myRT

myRT report for GCA_000807475.2_ASM80747v2

Download annotations/find similar RTs

Seq: CP010362.1 Klebsiella pneumoniae strain 38544 plasmid p38544-85.403kb, complete sequence (85403 bp)
Overview 1 RT 1: 76129-79285 bp Neighborhood of RT #1 [76129, 79302] DDE_Tnp_IS1 InsA RVT-GII PRK10276 Feature: gene Location: 76129-76632 bp Feature: domain Description: DDE_Tnp_IS1 Location: 76240-76630 bp Feature: domain Description: DDE_Tnp_IS1 Location: 76240-76630 bp Feature: gene Location: 76551-76826 bp Feature: domain Description: InsA Location: 76557-76818 bp Feature: domain Description: InsA Location: 76557-7681 8 bp Feature: gene Location: 76978-78462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77380-78070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77380-78070 bp Feature: gene Location: 78462-78713 bp Feature: gene Location: 78871-79302 bp Feature: domain Description: PRK10276 Location: 78922-79285 bp Feature: domain Description: PRK1 0276 Location: 78922-79285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: JWRM01000003.1 Klebsiella pneumoniae strain 38544 contig3, whole genome shotgun sequence (1930700 bp)
Overview 1 RT 1: 988828-996549 bp 2 RT 2: 1177012-1182376 bp Neighborhood of RT #1 [988828, 996605] umuC PRK10276 RVT-GII RVT-GII XerC Rve Neighborhood of RT #2 [1177012, 1182432] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Feature: gene Location: 988828-990093 bp Feature: domain Description: umuC Location: 988831-990091 bp Feature: domain Description: umuC Location: 988831-990091 bp Feature: gene Location: 990095-990514 bp Feature: domain Description: PRK10276 Location: 990098-990509 bp Feature: domain Description: PRK102 76 Location: 990098-990509 bp Feature: gene Location: 990594-992078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 990996-991686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 990996-991686 bp Feature: gene Location: 992504-993988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992906-993596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992 906-993596 bp Feature: gene Location: 994886-995308 bp Feature: domain Description: XerC Location: 994922-995267 bp Feature: domain Description: XerC Location: 99492 2 -9952 67 bp Feature: gene Location: 995901-996605 bp Feature: domain Description: Rve Location: 995904-996549 bp Feature: domain Description: Rve Location: 995904-996549 bp Feature: gene Location: 1177012-1178277 bp Feature: domain Description: umuC Location: 1177015-1178275 bp Feature: domain Description: umuC Location: 1177015-11782 75 bp Feature: gene Location: 1178280-1178699 bp Feature: domain Description: PRK10276 Location: 1178283-1178694 bp Feature: domain Description: PRK102 76 Location: 11782 83-1178694 bp Feature: gene Location: 1178778-1180262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1179180-1179870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1179180-1179870 bp Feature: gene Location: 1180880-1181122 bp Feature: domain Description: DinI Location: 1180931-1181111 bp Feature: domain Description: DinI Location: 1180931-1181111 bp Feature: gene Location: 1181293-1182432 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1181476-1182376 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1181476-1182 376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, XerC (COG4973), Rve (COG3316), DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789)

Seq: JWRM01000012.1 Klebsiella pneumoniae strain 38544 contig12, whole genome shotgun sequence (41503 bp)
Overview 1 RT 1: 17928-24411 bp Neighborhood of RT #1 [17928, 24413] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 17928-18986 bp Feature: domain Description: YccC Location: 17934-18972 bp Feature: domain Description: YccC Location: 1793 4-18972 bp Feature: gene Location: 19085-19558 bp Feature: domain Description: PRK10016 Location: 19088-19547 bp Feature: domain Description: PRK10016 Location: 19088-19547 bp Feature: gene Location: 19640-21124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20042-20732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20042-2073 2 bp Feature: gene Location: 21645-22808 bp Feature: domain Description: dacD Location: 21648-22803 bp Feature: domain Description: dacD Location: 21648-22803 bp Feature: gene Location: 22989-24413 bp Feature: domain Description: SbcB Location: 22995-24411 bp Feature: domain Description: SbcB Location: 22995-24411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397), SbcB (COG2925)

Seq: JWRM01000001.1 Klebsiella pneumoniae strain 38544 contig1, whole genome shotgun sequence (3099419 bp)
Overview 1 RT 1: 3203-6655 bp Neighborhood of RT #1 [3203, 6711] PRK10276 PRK10276 RVT-GII Laminin_G_3 Feature: gene Location: 3203-3520 bp Feature: domain Description: PRK10276 Location: 3209-3323 bp Feature: domain Description: PRK10276 Location: 3209-3323 bp Feature: domain Description: PRK10276 Location: 3350-3419 bp Feature: domain Description: PRK10276 Location: 3350-34 19 bp Feature: gene Location: 3520-3759 bp Feature: gene Location: 3837-5321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4239-4929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 239-4 929 bp Feature: gene Location: 5774-5983 bp Feature: gene Location: 5980-6711 bp Feature: domain Description: Laminin_G_3 Location: 6301-6655 bp Feature: domain Description: Laminin_G_3 Location: 6301-6655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Laminin_G_3 (pfam13385)