myRT

myRT report for GCA_000807515.2_ASM80751v2

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Seq: JWRK01000001.1 Klebsiella pneumoniae strain 6234 contig1, whole genome shotgun sequence (5310235 bp)
Overview 1 RT 1: 1228096-1235623 bp 2 RT 2: 3888831-3896157 bp 3 RT 3: 4062403-4071214 bp 4 RT 4: 4935351-4942455 bp 5 RT 5: 5282357-5288839 bp Neighborhood of RT #1 [1228096, 1235623] PHA00080 Phage_GPA RVT-GII DinI RVT-Retrons Neighborhood of RT #2 [3888831, 3896159] GT9_LPS_heptosyltransferase DinI RVT-GII RVT-GII PRK10276 umuC Neighborhood of RT #3 [4062403, 4071216] PinE XerC RVT-GII PRK10276 umuC RVT-UG11 PRK09951 PRK15110 Neighborhood of RT #4 [4935351, 4942964] PRK10276 RVT-GII Acyl_transf_3 End_tail_spike Neighborhood of RT #5 [5282357, 5288841] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 1228096-1228317 bp Ori: KHQ21219.1 Feature: domain Description: PHA00080 Location: 1228102-1228303 bp Feature: domain Description: PHA00080 Location: 1 2281 02-1 228303 bp Feature: gene Location: 1228319-1230535 bp Ori: KHQ21220.1 Feature: domain Description: Phage_GPA Location: 1228736-1229678 bp Feature: domain Description: Phage_GPA Location: 1 228736-1 229678 bp Feature: gene Location: 1231001-1232485 bp Ori: KHQ21221.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1231403-1232093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 231 403-1 232093 bp Feature: gene Location: 1232590-1233003 bp Ori: KHQ24887.1 Feature: domain Description: DinI Location: 1232818-1233001 bp Feature: domain Description: DinI Location: 1 23281 8-1 233001 bp Feature: gene Location: 1233622-1233822 bp Feature: gene Location: 1233910-1234860 bp Ori: KHQ21223.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1234090-1234633 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 234090-1 234633 bp Feature: gene Location: 1234999-1235430 bp Feature: gene Location: 1235429-1235623 bp Feature: gene Location: 3888831-3889970 bp Ori: KHQ23517.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3889014-3889914 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 388901 4-388991 4 bp Feature: gene Location: 3890141-3890383 bp Ori: KHQ23518.1 Feature: domain Description: DinI Location: 3890192-3890372 bp Feature: domain Description: DinI Location: 38901 92-3890372 bp Feature: gene Location: 3891000-3892484 bp Ori: KHQ23519.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3891402-3892092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3891 402-3892092 bp Feature: gene Location: 3892909-3894393 bp Ori: KHQ23520.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3893311-3894001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 389331 1 -3894001 bp Feature: gene Location: 3894472-3894891 bp Ori: KHQ23521.1 Feature: domain Description: PRK10276 Location: 3894475-3894886 bp Feature: domain Description: PRK1 0276 Location: 3894475-3894886 bp Feature: gene Location: 3894894-3896159 bp Ori: KHQ23522.1 Feature: domain Description: umuC Location: 3894897-3896157 bp Feature: domain Description: umuC Location: 3894897-38961 57 bp Feature: gene Location: 4062403-4062951 bp Ori: KHQ23679.1 Feature: domain Description: PinE Location: 4062406-4062943 bp Feature: domain Description: PinE Location: 4062406-4062943 bp Feature: gene Location: 4063029-4063451 bp Ori: KHQ23680.1 Feature: domain Description: XerC Location: 4063107-4063410 bp Feature: domain Description: XerC Location: 40631 07-406341 0 bp Feature: gene Location: 4064346-4065830 bp Ori: KHQ23681.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4064748-4065438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4064748-4065438 bp Feature: gene Location: 4065910-4066329 bp Ori: KHQ25076.1 Feature: domain Description: PRK10276 Location: 4065913-4066324 bp Feature: domain Description: PRK1 0276 Location: 406591 3-4066324 bp Feature: gene Location: 4066331-4067596 bp Ori: KHQ23682.1 Feature: domain Description: umuC Location: 4066334-4067594 bp Feature: domain Description: umuC Location: 4066334-4067594 bp Feature: gene Location: 4067752-4068009 bp Feature: gene Location: 4068398-4069177 bp Ori: KHQ25077.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 4068542-4068998 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 4068542-4068998 bp Feature: gene Location: 4069378-4070046 bp Ori: KHQ23684.1 Feature: domain Description: PRK09951 Location: 4069381-4070044 bp Feature: domain Description: PRK09951 Location: 4069381 -4070044 bp Feature: gene Location: 4070251-4071216 bp Ori: KHQ23685.1 Feature: domain Description: PRK15110 Location: 4070254-4071214 bp Feature: domain Description: PRK1 51 1 0 Location: 4070254-4071 21 4 bp Feature: gene Location: 4935351-4935668 bp Ori: KHQ24474.1 Feature: domain Description: PRK10276 Location: 4935357-4935477 bp Feature: domain Description: PRK1 0276 Location: 4935357-4935477 bp Feature: gene Location: 4935668-4935907 bp Feature: gene Location: 4936316-4937800 bp Ori: KHQ24476.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4936718-4937408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 493671 8-4937408 bp Feature: gene Location: 4937958-4938965 bp Ori: KHQ25131.1 Feature: domain Description: Acyl_transf_3 Location: 4937988-4938894 bp Feature: domain Description: Acyl_transf_3 Location: 4937988-4938894 bp Feature: gene Location: 4939128-4942964 bp Ori: KHQ24477.1 Feature: domain Description: End_tail_spike Location: 4942329-4942455 bp Feature: domain Description: End_tail_spike Location: 4942329-4942455 bp Feature: gene Location: 5282357-5283430 bp Ori: KHQ24797.1 Feature: domain Description: YccC Location: 5282378-5283416 bp Feature: domain Description: YccC Location: 5282378-528341 6 bp Feature: gene Location: 5283514-5283987 bp Ori: KHQ24798.1 Feature: domain Description: PRK10016 Location: 5283517-5283976 bp Feature: domain Description: PRK1 001 6 Location: 528351 7-5283976 bp Feature: gene Location: 5284069-5285553 bp Ori: KHQ24799.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5284471-5285161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5284471 -52851 61 bp Feature: gene Location: 5286073-5287236 bp Ori: KHQ25160.1 Feature: domain Description: dacD Location: 5286076-5287231 bp Feature: domain Description: dacD Location: 5286076-5287231 bp Feature: gene Location: 5287417-5288841 bp Ori: KHQ24800.1 Gene: sbcB Feature: domain Description: SbcB Location: 5287423-5288839 bp Feature: domain Description: SbcB Location: 5287423-5288839 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00080 (DksA-like zinc finger domain containing protein), Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), RVT-Retrons, GT9_LPS_heptosyltransferase (cd03789), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), PinE (COG1961), XerC (COG4973)
RVT-UG11, PRK09951 (hypothetical protein; Provisional), PRK15110 (peptide ABC transporter permease SapB), Acyl_transf_3 (pfam01757), End_tail_spike (pfam12219), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)

Seq: CP010390.1 Klebsiella pneumoniae strain 6234 plasmid p6234-198.371kb, complete sequence (198371 bp)
Overview 1 RT 1: 185615-188885 bp Neighborhood of RT #1 [185615, 188899] RVT-GII PRK10276 Feature: gene Location: 185615-185830 bp Feature: gene Location: 186097-186327 bp Feature: gene Location: 186561-188069 bp Ori: AJB79569.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186963-187677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186963-187677 bp Feature: gene Location: 188069-188320 bp Feature: gene Location: 188474-188899 bp Ori: AJB79571.1 Feature: domain Description: PRK10276 Location: 188477-188885 bp Feature: domain Description: PRK102 76 Location: 188477-188885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)