myRT

myRT report for GCA_000808245.1_ASM80824v1

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Seq: JUJK01000006.1 Pectobacterium carotovorum subsp. brasiliense strain Y29 Y29.scaffold6, whole genome shotgun sequence (266670 bp)
Overview 1 RT 1: 188452-194873 bp Neighborhood of RT #1 [188452, 194932] trmE RVT-Retrons HipA_Ec_like PRK09726 Feature: gene Location: 188452-189816 bp Ori: KHT03850.1 Gene: trmE Feature: domain Description: trmE Location: 188455-189814 bp Feature: domain Description: trmE Location: 1 88455-1 8981 4 bp Feature: gene Location: 190947-191909 bp Feature: gene Location: 191909-192844 bp Ori: KHT03852.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 192017-192605 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 9201 7-1 92605 bp Feature: gene Location: 193347-194666 bp Ori: KHT03853.1 Feature: domain Description: HipA_Ec_like Location: 193410-194649 bp Feature: domain Description: HipA_Ec_like Location: 1 9341 0-1 94649 bp Feature: gene Location: 194666-194932 bp Ori: KHT03854.1 Feature: domain Description: PRK09726 Location: 194669-194873 bp Feature: domain Description: PRK09726 Location: 1 94669-1 94873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trmE (PRK05291), RVT-Retrons, HipA_Ec_like (cd17808), PRK09726 (type II toxin-antitoxin system antitoxin HipB)

Seq: JUJK01000008.1 Pectobacterium carotovorum subsp. brasiliense strain Y29 Y29.scaffold8, whole genome shotgun sequence (262727 bp)
Overview 1 RT 1: 48726-56389 bp Neighborhood of RT #1 [48726, 56389] RVT-Retrons HTH_XRE Feature: gene Location: 48726-50318 bp Feature: gene Location: 50926-54768 bp Feature: gene Location: 54857-55828 bp Ori: KHT02679.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 55010-55565 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 55010-55565 bp Feature: gene Location: 55809-56099 bp Ori: KHT02680.1 Feature: domain Description: HTH_XRE Location: 55821-55986 bp Feature: domain Description: HTH_XRE Location: 5582 1-55986 bp Feature: gene Location: 56150-56389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530)

Seq: JUJK01000009.1 Pectobacterium carotovorum subsp. brasiliense strain Y29 Y29.scaffold9, whole genome shotgun sequence (211381 bp)
Overview 1 RT 1: 171313-179223 bp Neighborhood of RT #1 [171313, 179264] VI_effect_Hcp1 HTH_35 RVT-UG5 PRK10403 PRK10935 Feature: gene Location: 171313-171831 bp Ori: KHT02475.1 Feature: domain Description: VI_effect_Hcp1 Location: 171322-171817 bp Feature: domain Description: VI_effect_Hcp1 Location: 1713 22-171817 bp Feature: gene Location: 172448-172702 bp Ori: KHT02476.1 Feature: domain Description: HTH_35 Location: 172469-172688 bp Feature: domain Description: HTH_3 5 Location: 172469-172688 bp Feature: gene Location: 173690-176644 bp Ori: KHT02477.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 174185-174650 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 174185-174650 bp Feature: gene Location: 176827-177459 bp Ori: KHT02478.1 Feature: domain Description: PRK10403 Location: 176830-177457 bp Feature: domain Description: PRK10403 Location: 17683 0-177457 bp Feature: gene Location: 177546-179264 bp Ori: KHT02479.1 Feature: domain Description: PRK10935 Location: 177549-179223 bp Feature: domain Description: PRK1093 5 Location: 177549-179223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VI_effect_Hcp1 (TIGR03344), HTH_35 (pfam13693), RVT-UG5, PRK10403 (nitrate/nitrite response regulator protein NarP), PRK10935 (nitrate/nitrite two-component system sensor histidine kinase NarQ)