myRT

myRT report for GCA_000812445.1_ASM81244v1

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Seq: JWMB01000051.1 Cupriavidus sp. SHE NODE_54, whole genome shotgun sequence (76150 bp)
Overview 1 RT 1: 34710-42175 bp Neighborhood of RT #1 [34710, 42231] IS285 RVT-GII GIIM RVT_N RVT-GII YkfC COG4643 Toprim_3 Feature: gene Location: 34710-35129 bp Feature: gene Location: 35585-36853 bp Ori: KWR78045.1 Feature: domain Description: IS285 Location: 35666-36839 bp Feature: domain Description: IS285 Location: 35666-36839 bp Feature: gene Location: 36866-38179 bp Ori: KWR78046.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37199-37817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 99-3781 7 bp Feature: domain Description: GIIM Note: maturase Location: 37874-38075 bp Feature: domain Description: GIIM Note: maturase Location: 37874-38075 bp Feature: gene Location: 38335-39831 bp Ori: KWR78047.1 Feature: domain Description: RVT_N Location: 38398-38641 bp Feature: domain Description: RVT_N Location: 38398-38641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38686-39328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38686-39328 bp Feature: domain Description: YkfC Location: 39412-39616 bp Feature: domain Description: YkfC Location: 3941 2-3961 6 bp Feature: gene Location: 40823-41035 bp Feature: gene Location: 41140-42231 bp Ori: KWR78083.1 Feature: domain Description: COG4643 Location: 41257-41560 bp Feature: domain Description: COG4643 Location: 41 257-41 560 bp Feature: domain Description: Toprim_3 Location: 41893-42175 bp Feature: domain Description: Toprim_3 Location: 41 893-421 75 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), YkfC (COG3344), COG4643 (Uncharacterized domain associated with phage/plasmid primase ), Toprim_3 (pfam13362)

Seq: JWMB01000014.1 Cupriavidus sp. SHE NODE_16, whole genome shotgun sequence (4615 bp)
Overview 1 RT 1: 1220-4531 bp Neighborhood of RT #1 [1220, 4554] RVT-DGRs Avd_like Feature: gene Location: 1220-2473 bp Feature: gene Location: 2473-2790 bp Feature: gene Location: 2787-3977 bp Ori: KWR84488.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3039-3726 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3039-372 6 bp Feature: gene Location: 4198-4554 bp Ori: KWR84489.1 Feature: domain Description: Avd_like Location: 4225-4531 bp Feature: domain Description: Avd_like Location: 42 2 5-4531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: JWMB01000107.1 Cupriavidus sp. SHE NODE_119, whole genome shotgun sequence (168901 bp)
Overview 1 RT 1: 127276-136242 bp Neighborhood of RT #1 [127276, 136247] Spo0J DUF3701 Phage_int_SAM_1 RVT_N RVT-GII GIIM HNH MalT Feature: gene Location: 127276-128292 bp Ori: KWR71502.1 Feature: domain Description: Spo0J Location: 127486-128221 bp Feature: domain Description: Spo0J Location: 127486-128221 bp Feature: gene Location: 128360-129940 bp Ori: KWR71503.1 Feature: domain Description: DUF3701 Location: 128663-128912 bp Feature: domain Description: DUF3 701 Location: 128663 -128912 bp Feature: domain Description: Phage_int_SAM_1 Location: 129074-129200 bp Feature: domain Description: Phage_int_SAM_1 Location: 129074-129200 bp Feature: gene Location: 130718-132418 bp Ori: KWR71504.1 Feature: domain Description: RVT_N Location: 130772-131012 bp Feature: domain Description: RVT_N Location: 13 0772-13 1012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131060-131696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 1060-13 1696 bp Feature: domain Description: GIIM Note: maturase Location: 131747-131981 bp Feature: domain Description: GIIM Note: maturase Location: 13 1747-13 1981 bp Feature: domain Description: HNH Note: nucleases Location: 132239-132362 bp Feature: domain Description: HNH Note: nucleases Location: 13 223 9-13 23 62 bp Feature: gene Location: 132492-132725 bp Feature: gene Location: 133503-136247 bp Ori: KWR71506.1 Feature: domain Description: MalT Location: 133560-136242 bp Feature: domain Description: MalT Location: 13 3 560-13 6242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spo0J (COG1475), DUF3701 (pfam12482), Phage_int_SAM_1 (pfam02899), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), MalT (COG2909)

Seq: JWMB01000052.1 Cupriavidus sp. SHE NODE_55, whole genome shotgun sequence (153250 bp)
Overview 1 RT 1: 8895-15099 bp Neighborhood of RT #1 [8895, 15099] IS5 RVT_N RVT-GII GIIM IS5 Feature: gene Location: 8895-9407 bp Feature: domain Description: IS5 Location: 9084-9408 bp Feature: domain Description: IS5 Location: 9084 -94 08 bp Feature: gene Location: 9938-11177 bp Feature: gene Location: 11866-13371 bp Ori: KWR77797.1 Feature: domain Description: RVT_N Location: 11944-12178 bp Feature: domain Description: RVT_N Location: 1194 4 -12178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12223-12865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12223-12865 bp Feature: domain Description: GIIM Note: maturase Location: 12916-13150 bp Feature: domain Description: GIIM Note: maturase Location: 12916-13150 bp Feature: gene Location: 13444-13902 bp Feature: domain Description: IS5 Location: 13450-13876 bp Feature: domain Description: IS5 Location: 134 50-13876 bp Feature: gene Location: 14278-15099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JWMB01000008.1 Cupriavidus sp. SHE NODE_10, whole genome shotgun sequence (134931 bp)
Overview 1 RT 1: 120307-125246 bp Neighborhood of RT #1 [120307, 125246] CytC5 CytC5 RVT-Retrons HTH_XRE Feature: gene Location: 120307-121191 bp Ori: KWR85960.1 Feature: domain Description: CytC5 Location: 120466-120787 bp Feature: domain Description: CytC5 Location: 120466-120787 bp Feature: domain Description: CytC5 Location: 120823-121183 bp Feature: domain Description: CytC5 Location: 120823-121183 bp Feature: gene Location: 121985-122560 bp Feature: gene Location: 123134-124279 bp Ori: KWR85962.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 123602-123815 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 123602-123815 bp Feature: gene Location: 124341-124595 bp Ori: KWR85963.1 Feature: domain Description: HTH_XRE Location: 124389-124548 bp Feature: domain Description: HTH_XRE Location: 124389-1245 48 bp Feature: gene Location: 124821-125246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CytC5 (COG3245), RVT-Retrons, HTH_XRE (smart00530)