myRT

myRT report for GCA_000812465.1_ASM81246v1

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Seq: JWMA01000083.1 Cupriavidus sp. IDO NODE_91, whole genome shotgun sequence (8549 bp)
Overview 1 RT 1: 4315-8386 bp Neighborhood of RT #1 [4315, 8484] Cytochrom_D1 RVT-GII GIIM HTH_Tnp_1 HTH_Tnp_1 Feature: gene Location: 4315-5379 bp Feature: gene Location: 5537-5944 bp Feature: domain Description: Cytochrom_D1 Location: 5540-5930 bp Feature: domain Description: Cytochrom_D1 Location: 5540-5930 bp Feature: gene Location: 6678-7928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6882-7539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6882-7539 bp Feature: domain Description: GIIM Note: maturase Location: 7620-7839 bp Feature: domain Description: GIIM Note: maturase Location: 7620-7839 bp Feature: gene Location: 8074-8484 bp Feature: domain Description: HTH_Tnp_1 Location: 8077-8140 bp Feature: domain Description: HTH_Tnp_1 Location: 8077-81 40 bp Feature: domain Description: HTH_Tnp_1 Location: 8158-8386 bp Feature: domain Description: HTH_Tnp_1 Location: 81 58-8386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cytochrom_D1 (pfam02239), RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527)

Seq: JWMA01000206.1 Cupriavidus sp. IDO NODE_600, whole genome shotgun sequence (2048 bp)
Overview 1 RT 1: 124-1348 bp Neighborhood of RT #1 [124, 1431] RVT-GII GIIM Feature: gene Location: 124-1431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1045 bp Feature: domain Description: GIIM Note: maturase Location: 1120-1348 bp Feature: domain Description: GIIM Note: maturase Location: 112 0-1348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JWMA01000142.1 Cupriavidus sp. IDO NODE_188, whole genome shotgun sequence (2381 bp)
Overview 1 RT 1: 119-1388 bp Neighborhood of RT #1 [119, 1636] RVT-GII GIIM Feature: gene Location: 119-1636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377-1115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 77-1115 bp Feature: domain Description: GIIM Note: maturase Location: 1226-1388 bp Feature: domain Description: GIIM Note: maturase Location: 1226-13 88 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JWMA01000160.1 Cupriavidus sp. IDO NODE_221, whole genome shotgun sequence (64262 bp)
Overview 1 RT 1: 191-4310 bp Neighborhood of RT #1 [191, 4366] RVT_N RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like INT_RitA_C_like Feature: gene Location: 191-1576 bp Feature: RT Description: RVT_N Location: 206-383 bp Feature: RT Description: RVT_N Location: 206-383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437-1079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 37-1079 bp Feature: domain Description: GIIM Note: maturase Location: 1130-1364 bp Feature: domain Description: GIIM Note: maturase Location: 1130-1364 bp Feature: gene Location: 1652-2683 bp Feature: domain Description: Phage_int_SAM_1 Location: 1703-1949 bp Feature: domain Description: Phage_int_SAM_1 Location: 1703-194 9 bp Feature: domain Description: INT_RitC_C_like Location: 2042-2594 bp Feature: domain Description: INT_RitC_C_like Location: 204 2-2594 bp Feature: gene Location: 3638-4366 bp Feature: domain Description: INT_RitA_C_like Location: 3809-4310 bp Feature: domain Description: INT_RitA_C_like Location: 3809-4 310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JWMA01000123.1 Cupriavidus sp. IDO NODE_152, whole genome shotgun sequence (4188 bp)
Overview 1 RT 1: 506-3943 bp Neighborhood of RT #1 [506, 4029] RVT-GII RVT-GII GIIM Feature: gene Location: 506-2323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1241-1931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1241-1931 bp Feature: gene Location: 2728-4029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3013-3652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3013-365 2 bp Feature: domain Description: GIIM Note: maturase Location: 3724-3943 bp Feature: domain Description: GIIM Note: maturase Location: 3724-3943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JWMA01000013.1 Cupriavidus sp. IDO NODE_14, whole genome shotgun sequence (46128 bp)
Overview 1 RT 1: 346-4975 bp Neighborhood of RT #1 [346, 5046] COG4420 RVT-GII GIIM cNMP HTH_Crp_2 Feature: gene Location: 346-894 bp Feature: domain Description: COG4420 Location: 472-829 bp Feature: domain Description: COG4420 Location: 472-829 bp Feature: gene Location: 1524-2753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1728-2385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1728-2385 bp Feature: domain Description: GIIM Note: maturase Location: 2463-2685 bp Feature: domain Description: GIIM Note: maturase Location: 246 3-26 85 bp Feature: gene Location: 3634-3987 bp Feature: gene Location: 4327-5046 bp Feature: domain Description: cNMP Location: 4363-4627 bp Feature: domain Description: cNMP Location: 436 3-46 27 bp Feature: domain Description: HTH_Crp_2 Location: 4777-4975 bp Feature: domain Description: HTH_Crp_2 Location: 4777-4975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG4420 (Uncharacterized membrane protein ), cNMP (smart00100), HTH_Crp_2 (pfam13545)

Seq: JWMA01000055.1 Cupriavidus sp. IDO NODE_61, whole genome shotgun sequence (204031 bp)
Overview 1 RT 1: 115706-119725 bp Neighborhood of RT #1 [115706, 119725] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 115706-116269 bp Feature: domain Description: DUF1566 Location: 115889-116255 bp Feature: domain Description: DUF1566 Location: 115889-116255 bp Feature: gene Location: 116287-116640 bp Feature: domain Description: Avd_like Location: 116314-116620 bp Feature: domain Description: Avd_like Location: 116314-116620 bp Feature: gene Location: 116862-118052 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 117114-117912 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 117 114-117 912 bp Feature: gene Location: 118614-118937 bp Feature: gene Location: 119117-119725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: JWMA01000187.1 Cupriavidus sp. IDO NODE_373, whole genome shotgun sequence (1452 bp)
Overview 1 RT 1: 76-1072 bp Neighborhood of RT #1 [76, 1452] RVT-GII Feature: gene Location: 76-1452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385-1072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38 5-1072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JWMA01000063.1 Cupriavidus sp. IDO NODE_69, whole genome shotgun sequence (121152 bp)
Overview 1 RT 1: 110588-117994 bp Neighborhood of RT #1 [110588, 118050] HTH_1 PBP2_CrgA_like_5 ALDH_CddD_SSP0762 RVT-GII GIIM He_PIG He_PIG He_PIG Kelch Kelch_4 Kelch Kelch_4 MltF Feature: gene Location: 110588-111510 bp Feature: domain Description: HTH_1 Location: 110606-110780 bp Feature: domain Description: HTH_1 Location: 110606-110780 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 110864-111392 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 110864-11139 2 bp Feature: gene Location: 111577-112107 bp Feature: domain Description: ALDH_CddD_SSP0762 Location: 111583-112096 bp Feature: domain Description: ALDH_CddD_SSP0762 Location: 111583-11209 6 bp Feature: gene Location: 112820-114103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113069-113732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113069 -113732 bp Feature: domain Description: GIIM Note: maturase Location: 113801-114017 bp Feature: domain Description: GIIM Note: maturase Location: 113801-114017 bp Feature: gene Location: 114433-116361 bp Feature: domain Description: He_PIG Location: 114643-114754 bp Feature: domain Description: He_PIG Location: 114643-114754 bp Feature: domain Description: He_PIG Location: 114910-115015 bp Feature: domain Description: He_PIG Location: 1149 10-115015 bp Feature: domain Description: He_PIG Location: 115198-115306 bp Feature: domain Description: He_PIG Location: 11519 8-115306 bp Feature: domain Description: Kelch Location: 115327-115672 bp Feature: domain Description: Kelch Location: 115327-115672 bp Feature: domain Description: Kelch_4 Location: 115681-115822 bp Feature: domain Description: Kelch_4 Location: 115681-115822 bp Feature: domain Description: Kelch Location: 115834-116185 bp Feature: domain Description: Kelch Location: 115834-116185 bp Feature: domain Description: Kelch_4 Location: 116266-116338 bp Feature: domain Description: Kelch_4 Location: 116266-116338 bp Feature: gene Location: 116509-118050 bp Feature: domain Description: MltF Location: 116698-117994 bp Feature: domain Description: MltF Location: 11669 8-1179 9 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_CrgA_like_5 (cd08474), ALDH_CddD_SSP0762 (cd07138), RVT-GII, GIIM (pfam08388), He_PIG (pfam05345), Kelch (smart00612), Kelch_4 (pfam13418), MltF (COG4623)