myRT

myRT report for GCA_000815485.1_ASM81548v1

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Seq: AMJP01000009.1 Shigella flexneri S5717 S5717_10, whole genome shotgun sequence (18824 bp)
Overview 1 RT 1: 11573-14226 bp Neighborhood of RT #1 [11573, 14226] COG3547 RVT-GII GIIM Feature: gene Location: 11573-12058 bp Feature: domain Description: COG3547 Location: 11591-12044 bp Feature: domain Description: COG3547 Location: 1 1 591 -1 2044 bp Feature: gene Location: 12154-12321 bp Feature: gene Location: 12347-13564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12533-13187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2533-1 31 87 bp Feature: domain Description: GIIM Note: maturase Location: 13265-13487 bp Feature: domain Description: GIIM Note: maturase Location: 1 3265-1 3487 bp Feature: gene Location: 13575-13958 bp Feature: gene Location: 14032-14226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: AMJP01000102.1 Shigella flexneri S5717 S5717_103, whole genome shotgun sequence (54531 bp)
Overview 1 RT 1: 45642-52777 bp Neighborhood of RT #1 [45642, 52842] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 45642-49760 bp Feature: domain Description: ESPR Location: 45645-45714 bp Feature: domain Description: ESPR Location: 45645-45714 bp Feature: domain Description: Peptidase_S6 Location: 45795-47967 bp Feature: domain Description: Peptidase_S6 Location: 45795-47967 bp Feature: domain Description: autotrans_barl Location: 48531-49758 bp Feature: domain Description: autotrans_barl Location: 48531-49758 bp Feature: gene Location: 49925-50311 bp Feature: domain Description: PHA02517 Location: 49928-50309 bp Feature: domain Description: PHA02 517 Location: 4992 8-50309 bp Feature: gene Location: 50488-52011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50761-51493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50761-51493 bp Feature: domain Description: GIIM Note: maturase Location: 51568-51766 bp Feature: domain Description: GIIM Note: maturase Location: 51568-51766 bp Feature: gene Location: 51965-52390 bp Feature: gene Location: 52603-52842 bp Feature: domain Description: PHA02517 Location: 52606-52777 bp Feature: domain Description: PHA02 517 Location: 52 606-52 777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AMJP01000037.1 Shigella flexneri S5717 S5717_38, whole genome shotgun sequence (29837 bp)
Overview 1 RT 1: 15906-18607 bp Neighborhood of RT #1 [15906, 18627] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 15906-16061 bp Feature: gene Location: 16087-16458 bp Feature: domain Description: GIIM Note: maturase Location: 16165-16384 bp Feature: domain Description: GIIM Note: maturase Location: 16165-163 84 bp Feature: gene Location: 16466-17269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16766-17261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16766-17261 bp Feature: gene Location: 17282-17482 bp Feature: domain Description: Tra5 Location: 17291-17465 bp Feature: domain Description: Tra5 Location: 17291-17465 bp Feature: gene Location: 17878-18627 bp Feature: domain Description: PAP2_acid_phosphatase Location: 17953-18607 bp Feature: domain Description: PAP2_acid_phosphatase Location: 17953 -18607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)