myRT

myRT report for GCA_000815595.1_ASM81559v1

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Seq: AMJV01000123.1 Shigella flexneri S6678 S6678_124, whole genome shotgun sequence (8973 bp)
Overview 1 RT 1: 69-7204 bp Neighborhood of RT #1 [69, 7269] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 69-4187 bp Feature: domain Description: ESPR Location: 72-141 bp Feature: domain Description: ESPR Location: 72-1 41 bp Feature: domain Description: Peptidase_S6 Location: 222-2394 bp Feature: domain Description: Peptidase_S6 Location: 222-2394 bp Feature: domain Description: autotrans_barl Location: 2958-4185 bp Feature: domain Description: autotrans_barl Location: 2958-41 85 bp Feature: gene Location: 4352-4738 bp Feature: domain Description: PHA02517 Location: 4355-4736 bp Feature: domain Description: PHA0251 7 Location: 4355-4736 bp Feature: gene Location: 4915-6438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5188-5920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 88-5920 bp Feature: domain Description: GIIM Note: maturase Location: 5995-6193 bp Feature: domain Description: GIIM Note: maturase Location: 5995-61 93 bp Feature: gene Location: 6392-6817 bp Feature: gene Location: 7030-7269 bp Feature: domain Description: PHA02517 Location: 7033-7204 bp Feature: domain Description: PHA0251 7 Location: 7033-7204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: AMJV01000040.1 Shigella flexneri S6678 S6678_41, whole genome shotgun sequence (37381 bp)
Overview 1 RT 1: 7915-10616 bp Neighborhood of RT #1 [7915, 10636] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 7915-8070 bp Feature: gene Location: 8096-8467 bp Feature: domain Description: GIIM Note: maturase Location: 8174-8393 bp Feature: domain Description: GIIM Note: maturase Location: 8174-8393 bp Feature: gene Location: 8475-9278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8775-9270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8775-92 70 bp Feature: gene Location: 9291-9491 bp Feature: domain Description: Tra5 Location: 9300-9474 bp Feature: domain Description: Tra5 Location: 9300-9474 bp Feature: gene Location: 9887-10636 bp Feature: domain Description: PAP2_acid_phosphatase Location: 9962-10616 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 9962 -10616 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: AMJV01000008.1 Shigella flexneri S6678 S6678_9, whole genome shotgun sequence (18864 bp)
Overview 1 RT 1: 11558-14211 bp Neighborhood of RT #1 [11558, 14211] COG3547 RVT-GII GIIM Feature: gene Location: 11558-12043 bp Feature: domain Description: COG3547 Location: 11576-12029 bp Feature: domain Description: COG3 547 Location: 11576-12029 bp Feature: gene Location: 12139-12306 bp Feature: gene Location: 12332-13549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12518-13172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12518-13 172 bp Feature: domain Description: GIIM Note: maturase Location: 13250-13472 bp Feature: domain Description: GIIM Note: maturase Location: 13 250-13 472 bp Feature: gene Location: 13560-13943 bp Feature: gene Location: 14017-14211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)