myRT

myRT report for GCA_000815735.1_ASM81573v1

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Seq: AMKC01000023.1 Shigella boydii 08-2675 SB_08_2675_24, whole genome shotgun sequence (13183 bp)
Overview 1 RT 1: 6446-9762 bp Neighborhood of RT #1 [6446, 9764] PAP2_acid_phosphatase Tra5 RVT-GII InsE PHA02517 Feature: gene Location: 6446-7195 bp Feature: domain Description: PAP2_acid_phosphatase Location: 6521-7175 bp Feature: domain Description: PAP2_acid_phosphatase Location: 6521 -71 75 bp Feature: gene Location: 7570-7791 bp Feature: domain Description: Tra5 Location: 7582-7774 bp Feature: domain Description: Tra5 Location: 7582-7774 bp Feature: gene Location: 7804-8499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8104-8497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 04-8497 bp Feature: gene Location: 8551-8877 bp Feature: domain Description: InsE Location: 8554-8875 bp Feature: domain Description: InsE Location: 8554-8875 bp Feature: gene Location: 9117-9764 bp Feature: domain Description: PHA02517 Location: 9120-9762 bp Feature: domain Description: PHA0251 7 Location: 91 20-9762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)

Seq: AMKC01000300.1 Shigella boydii 08-2675 SB_08_2675_301, whole genome shotgun sequence (2246 bp)
Overview 1 RT 1: 2-1783 bp Neighborhood of RT #1 [2, 1800] RVT-Retrons PRK10597 Feature: gene Location: 2-1177 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 317-908 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 317-908 bp Feature: gene Location: 1349-1510 bp Feature: gene Location: 1513-1800 bp Feature: domain Description: PRK10597 Location: 1543-1783 bp Feature: domain Description: PRK10597 Location: 1543-1783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons

Seq: AMKC01000005.1 Shigella boydii 08-2675 SB_08_2675_6, whole genome shotgun sequence (18967 bp)
Overview 1 RT 1: 12278-14932 bp Neighborhood of RT #1 [12278, 14932] COG3547 RVT-GII GIIM Feature: gene Location: 12278-12763 bp Feature: domain Description: COG3547 Location: 12296-12749 bp Feature: domain Description: COG3 547 Location: 12296-12749 bp Feature: gene Location: 12859-13026 bp Feature: gene Location: 13052-14269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13238-13892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 23 8-13 892 bp Feature: domain Description: GIIM Note: maturase Location: 13970-14192 bp Feature: domain Description: GIIM Note: maturase Location: 13 970-14192 bp Feature: gene Location: 14280-14699 bp Feature: gene Location: 14738-14932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)