myRT

myRT report for GCA_000816555.1_ASM81655v1

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Seq: JWST01000001.1 Bacillus thuringiensis strain AK47 scaffold1.1, whole genome shotgun sequence (731970 bp)
Overview 1 RT 1: 728914-731969 bp Neighborhood of RT #1 [728914, 731968] rnc SMC_prok_B RVT-GII Feature: gene Location: 728914-729702 bp Feature: domain Description: rnc Location: 729016-729694 bp Feature: domain Description: rnc Location: 72901 6-729694 bp Feature: gene Location: 729849-730340 bp Feature: domain Description: SMC_prok_B Location: 729855-730323 bp Feature: domain Description: SMC_prok_B Location: 729855-730323 bp Feature: gene Location: 731282-731968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 731540-731969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 731 540-731 969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rnc (PRK00102), SMC_prok_B (TIGR02168), RVT-GII

Seq: JWST01000004.1 Bacillus thuringiensis strain AK47 scaffold12.1, whole genome shotgun sequence (208338 bp)
Overview 1 RT 1: 163750-172896 bp Neighborhood of RT #1 [163750, 172937] AE_Prim_S_like RVT-UG10 PRK13922 RapH_N TPR TPR Feature: gene Location: 163750-164367 bp Feature: gene Location: 164377-164802 bp Feature: gene Location: 165241-170880 bp Feature: domain Description: AE_Prim_S_like Location: 165451-165670 bp Feature: domain Description: AE_Prim_S_like Location: 165451-165670 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 166657-167311 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 166657-167311 bp Feature: gene Location: 171156-171383 bp Feature: domain Description: PRK13922 Location: 171243-171363 bp Feature: domain Description: PRK1392 2 Location: 1712 43-171363 bp Feature: gene Location: 171846-172937 bp Feature: domain Description: RapH_N Location: 171867-172038 bp Feature: domain Description: RapH_N Location: 171867-172 038 bp Feature: domain Description: TPR Location: 172173-172440 bp Feature: domain Description: TPR Location: 172 173-172 440 bp Feature: domain Description: TPR Location: 172485-172896 bp Feature: domain Description: TPR Location: 172 485-172 896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AE_Prim_S_like (cl01287), RVT-UG10, PRK13922 (rod shape-determining protein MreC; Provisional), RapH_N (pfam18801), TPR (smart00028)

Seq: JWST01000006.1 Bacillus thuringiensis strain AK47 scaffold14.1, whole genome shotgun sequence (189488 bp)
Overview 1 RT 1: 53645-60874 bp 2 RT 2: 103503-117139 bp 3 RT 3: 143519-149270 bp 4 RT 4: 159290-166945 bp Neighborhood of RT #1 [53645, 60874] KOG1000 KOG1000 RVT-GII GIIM Neighborhood of RT #2 [103503, 117139] Ftsk_gamma RVT-GII GIIM HNHc RVT-GII HNHc RVT-GII Intron_maturas2 HNHc Neighborhood of RT #3 [143519, 149299] RVT-GII HNHc LPD1 DUF3854 Neighborhood of RT #4 [159290, 167004] CwlT_like RVT-GII HNHc CwlT_like RVT-GII Intron_maturas2 HNHc NlpD Spr Feature: gene Location: 53645-54358 bp Feature: gene Location: 54375-56777 bp Feature: domain Description: KOG1000 Location: 55083-55299 bp Feature: domain Description: KOG1000 Location: 55083 -55299 bp Feature: domain Description: KOG1000 Location: 55902-56235 bp Feature: domain Description: KOG1000 Location: 55902-5623 5 bp Feature: gene Location: 57055-58920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57355-58060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573 55-58060 bp Feature: domain Description: GIIM Note: maturase Location: 58147-58330 bp Feature: domain Description: GIIM Note: maturase Location: 58147-583 3 0 bp Feature: gene Location: 59667-60575 bp Feature: gene Location: 60647-60874 bp Feature: gene Location: 103503-104276 bp Feature: gene Location: 104545-106227 bp Feature: domain Description: Ftsk_gamma Location: 105172-105352 bp Feature: domain Description: Ftsk_gamma Location: 105172-1053 52 bp Feature: gene Location: 106568-108442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106868-107573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106868-107573 bp Feature: domain Description: GIIM Note: maturase Location: 107687-107855 bp Feature: domain Description: GIIM Note: maturase Location: 107687-107855 bp Feature: domain Description: HNHc Note: nucleases Location: 108203-108368 bp Feature: domain Description: HNHc Note: nucleases Location: 108203 -1083 68 bp Feature: gene Location: 109115-109498 bp Feature: gene Location: 109618-109788 bp Feature: gene Location: 109854-111644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110151-110847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110151-110847 bp Feature: domain Description: HNHc Note: nucleases Location: 111387-111519 bp Feature: domain Description: HNHc Note: nucleases Location: 1113 87-111519 bp Feature: gene Location: 112561-112707 bp Feature: gene Location: 112846-114669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113116-113944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113 116-113 944 bp Feature: domain Description: Intron_maturas2 Location: 114016-114334 bp Feature: domain Description: Intron_maturas2 Location: 114016-1143 3 4 bp Feature: domain Description: HNHc Note: nucleases Location: 114487-114640 bp Feature: domain Description: HNHc Note: nucleases Location: 114487-114640 bp Feature: gene Location: 115506-116651 bp Feature: gene Location: 116669-117139 bp Feature: gene Location: 143519-144610 bp Feature: gene Location: 144975-145157 bp Feature: gene Location: 145331-147127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145625-146321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145625-1463 21 bp Feature: domain Description: HNHc Note: nucleases Location: 146921-146996 bp Feature: domain Description: HNHc Note: nucleases Location: 146921-146996 bp Feature: gene Location: 147199-147996 bp Feature: domain Description: LPD1 Location: 147745-147940 bp Feature: domain Description: LPD1 Location: 147745-147940 bp Feature: gene Location: 147986-149299 bp Feature: domain Description: DUF3854 Location: 148931-149270 bp Feature: domain Description: DUF3 854 Location: 14893 1-149270 bp Feature: gene Location: 159290-160285 bp Feature: domain Description: CwlT_like Location: 160139-160262 bp Feature: domain Description: CwlT_like Location: 16013 9-160262 bp Feature: gene Location: 160748-160966 bp Feature: gene Location: 161278-163074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161536-162241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16153 6-162241 bp Feature: domain Description: HNHc Note: nucleases Location: 162802-162937 bp Feature: domain Description: HNHc Note: nucleases Location: 162802-16293 7 bp Feature: gene Location: 163143-163310 bp Feature: gene Location: 163379-163570 bp Feature: domain Description: CwlT_like Location: 163406-163562 bp Feature: domain Description: CwlT_like Location: 163 406-163 562 bp Feature: gene Location: 164146-165969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164410-165244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164410-165244 bp Feature: domain Description: Intron_maturas2 Location: 165313-165652 bp Feature: domain Description: Intron_maturas2 Location: 1653 13 -165652 bp Feature: domain Description: HNHc Note: nucleases Location: 165790-165946 bp Feature: domain Description: HNHc Note: nucleases Location: 165790-165946 bp Feature: gene Location: 165971-166105 bp Feature: gene Location: 166129-167004 bp Feature: domain Description: NlpD Location: 166144-166573 bp Feature: domain Description: NlpD Location: 166144-166573 bp Feature: domain Description: Spr Location: 166609-166945 bp Feature: domain Description: Spr Location: 166609-166945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, GIIM (pfam08388), Ftsk_gamma (smart00843), HNHc (smart00507), Intron_maturas2 (pfam01348), LPD1 (pfam18796), DUF3854 (pfam12965), CwlT_like, NlpD (COG0739)
Spr (COG0791)

Seq: JWST01000044.1 Bacillus thuringiensis strain AK47 scaffold5.1, whole genome shotgun sequence (346136 bp)
Overview 1 RT 1: 25259-29881 bp Neighborhood of RT #1 [25259, 30012] DDE_Tnp_1 RVT-GII GIIM DUF1796 Feature: gene Location: 25259-26311 bp Feature: domain Description: DDE_Tnp_1 Location: 25613-26297 bp Feature: domain Description: DDE_Tnp_1 Location: 25613-26297 bp Feature: gene Location: 26698-26877 bp Feature: gene Location: 27027-28358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27336-27975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27336-27975 bp Feature: domain Description: GIIM Note: maturase Location: 28050-28275 bp Feature: domain Description: GIIM Note: maturase Location: 28050-28275 bp Feature: gene Location: 28469-28696 bp Feature: gene Location: 29329-30012 bp Feature: domain Description: DUF1796 Location: 29377-29881 bp Feature: domain Description: DUF1796 Location: 29377-29881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), DUF1796 (pfam08795)