myRT

myRT report for GCA_000819365.1_Escherichia_coli_CVM_N33653PS_v1.0

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Seq: JWZN01000209.1 (2738 bp)
Overview 1 RT 1: 46-2666 bp Neighborhood of RT #1 [46, 2738] DUF932 RVT-GII Feature: gene Location: 46-867 bp Ori: KIH18730.1 Feature: domain Description: DUF932 Location: 154-832 bp Feature: domain Description: DUF932 Location: 1 54-832 bp Feature: gene Location: 2414-2738 bp Ori: KIH18731.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2417-2666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 7-2666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII

Seq: JWZN01000260.1 (1973 bp)
Overview 1 RT 1: 1-1264 bp Neighborhood of RT #1 [1, 1379] RVT_N RVT-GII GIIM Feature: gene Location: 1-1379 bp Ori: KIH15974.1 Feature: domain Description: RVT_N Location: 49-286 bp Feature: domain Description: RVT_N Location: 49-2 86 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-979 bp Feature: domain Description: GIIM Note: maturase Location: 1030-1264 bp Feature: domain Description: GIIM Note: maturase Location: 1030-12 64 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JWZN01000168.1 (38690 bp)
Overview 1 RT 1: 428-7878 bp Neighborhood of RT #1 [428, 7889] RVT-UG8 RVT-UG3 INT_Rci_Hp1_C INT_P4_C mutS1 Feature: gene Location: 428-2446 bp Ori: KIH19278.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 998-1448 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 998-1448 bp Feature: gene Location: 2443-3705 bp Ori: KIH19279.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2725-3220 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2725-3 220 bp Feature: gene Location: 3702-5162 bp Ori: KIH19280.1 Feature: domain Description: INT_Rci_Hp1_C Location: 4077-4284 bp Feature: domain Description: INT_Rci_Hp1_C Location: 4077-4284 bp Feature: domain Description: INT_P4_C Location: 4503-5040 bp Feature: domain Description: INT_P4_C Location: 4503 -5040 bp Feature: gene Location: 5322-7889 bp Ori: KIH19311.1 Feature: domain Description: mutS1 Location: 5358-7878 bp Feature: domain Description: mutS1 Location: 53 58-7878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, RVT-UG3, INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), mutS1 (TIGR01070)

Seq: JWZN01000172.1 (3045 bp)
Overview 1 RT 1: 1-2058 bp Neighborhood of RT #1 [1, 2058] RVT-Retrons XRE Feature: gene Location: 1-347 bp Feature: gene Location: 444-1394 bp Ori: KIH19135.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 624-1155 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 624 -1155 bp Feature: gene Location: 1384-1680 bp Ori: KIH19138.1 Feature: domain Description: XRE Location: 1393-1576 bp Feature: domain Description: XRE Location: 1393-1576 bp Feature: gene Location: 1870-2058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, XRE (COG1476)