myRT

myRT report for GCA_000820865.2_Bacillus_saudimassiliensis_JCA

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Seq: LN623566.1 (248467 bp)
Overview 1 RT 1: 185416-190758 bp Neighborhood of RT #1 [185416, 190775] YozG PRK13556 RVT-GII GIIM GIIM Qor PRK13756 Feature: gene Location: 185416-185634 bp Feature: domain Description: YozG Location: 185419-185629 bp Feature: domain Description: YozG Location: 1 8541 9-1 85629 bp Feature: gene Location: 186161-186793 bp Feature: domain Description: PRK13556 Location: 186167-186776 bp Feature: domain Description: PRK1 3556 Location: 1 861 67-1 86776 bp Feature: gene Location: 187481-188923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187709-188333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 87709-1 88333 bp Feature: domain Description: GIIM Note: maturase Location: 188408-188519 bp Feature: domain Description: GIIM Note: maturase Location: 1 88408-1 8851 9 bp Feature: domain Description: GIIM Note: maturase Location: 188594-188696 bp Feature: domain Description: GIIM Note: maturase Location: 1 88594-1 88696 bp Feature: gene Location: 189044-190012 bp Feature: domain Description: Qor Location: 189047-189956 bp Feature: domain Description: Qor Location: 1 89047-1 89956 bp Feature: gene Location: 190167-190775 bp Feature: domain Description: PRK13756 Location: 190176-190758 bp Feature: domain Description: PRK1 3756 Location: 1 901 76-1 90758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YozG (COG3655), PRK13556 (FMN-dependent NADH-azoreductase), RVT-GII, GIIM (pfam08388), Qor (COG0604), PRK13756 (TetR family transcriptional regulator)

Seq: LN623560.1 (2179 bp)
Overview 1 RT 1: 96-1209 bp Neighborhood of RT #1 [96, 1529] RVT-GII GIIM Feature: gene Location: 96-1529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 324-948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 4-948 bp Feature: domain Description: GIIM Note: maturase Location: 1020-1209 bp Feature: domain Description: GIIM Note: maturase Location: 102 0-12 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LN623571.1 (734921 bp)
Overview 1 RT 1: 393444-398866 bp Neighborhood of RT #1 [393444, 398880] HTH_ARAC YdeE RVT-GII GIIM LysM LysM LysM LysM PRK13914 Feature: gene Location: 393444-394010 bp Feature: gene Location: 394096-394971 bp Feature: domain Description: HTH_ARAC Location: 394162-394408 bp Feature: domain Description: HTH_ARAC Location: 3 94162-3 94408 bp Feature: domain Description: YdeE Location: 394480-394966 bp Feature: domain Description: YdeE Location: 3 94480-3 94966 bp Feature: gene Location: 395647-397080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395875-396499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 95875-3 96499 bp Feature: domain Description: GIIM Note: maturase Location: 396571-396760 bp Feature: domain Description: GIIM Note: maturase Location: 3 96571-3 96760 bp Feature: gene Location: 397354-397509 bp Feature: gene Location: 397603-398880 bp Feature: domain Description: LysM Location: 397711-397837 bp Feature: domain Description: LysM Location: 3 97711-3 9783 7 bp Feature: domain Description: LysM Location: 397894-398020 bp Feature: domain Description: LysM Location: 3 97894-3 98020 bp Feature: domain Description: LysM Location: 398116-398242 bp Feature: domain Description: LysM Location: 3 98116-3 98242 bp Feature: domain Description: LysM Location: 398308-398434 bp Feature: domain Description: LysM Location: 3 983 08-3 9843 4 bp Feature: domain Description: PRK13914 Location: 398455-398866 bp Feature: domain Description: PRK13 914 Location: 3 98455-3 98866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), YdeE (COG3708), RVT-GII, GIIM (pfam08388), LysM (smart00257), PRK13914 (invasion associated endopeptidase)

Seq: LN623567.1 (417216 bp)
Overview 1 RT 1: 123144-126157 bp Neighborhood of RT #1 [123144, 126174] TRX_family RnmV RVT-GII GIIM GIIM PRK01202 ArsC_like Feature: gene Location: 123144-123455 bp Feature: domain Description: TRX_family Location: 123171-123417 bp Feature: domain Description: TRX_family Location: 123171-1234 17 bp Feature: gene Location: 123459-123821 bp Feature: domain Description: RnmV Location: 123483-123807 bp Feature: domain Description: RnmV Location: 1234 83-123807 bp Feature: gene Location: 124162-124986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124210-124396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124 210-124 396 bp Feature: domain Description: GIIM Note: maturase Location: 124471-124582 bp Feature: domain Description: GIIM Note: maturase Location: 124 4 71-124 582 bp Feature: domain Description: GIIM Note: maturase Location: 124657-124759 bp Feature: domain Description: GIIM Note: maturase Location: 124 657-124 759 bp Feature: gene Location: 125350-125763 bp Feature: domain Description: PRK01202 Location: 125383-125755 bp Feature: domain Description: PRK01202 Location: 125383-125755 bp Feature: gene Location: 125806-126174 bp Feature: domain Description: ArsC_like Location: 125827-126157 bp Feature: domain Description: ArsC_like Location: 125827-126157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TRX_family (cd02947), RnmV (COG1658), RVT-GII, GIIM (pfam08388), PRK01202 (glycine cleavage system protein GcvH), ArsC_like (cd03036)

Seq: LN623568.1 (639803 bp)
Overview 1 RT 1: 160221-167556 bp 2 RT 2: 555853-562978 bp 3 RT 3: 625681-632255 bp Neighborhood of RT #1 [160221, 167561] DUF2777 asn_synth_AEB RVT-GII GIIM GIIM AmyAc_bac_CMD_like_2 AmyAc_SI_OligoGlu_DGase PRK10785 PRK06701 Neighborhood of RT #2 [555853, 563028] PRK08210 DHDPS RVT-GII GIIM GIIM RnjA ClpP Neighborhood of RT #3 [625681, 632290] SirA PRK01844 RVT-GII GIIM GIIM PRK10789 MdlB Feature: gene Location: 160221-160784 bp Feature: domain Description: DUF2777 Location: 160233-160770 bp Feature: domain Description: DUF2777 Location: 160233-160770 bp Feature: gene Location: 161018-162865 bp Feature: domain Description: asn_synth_AEB Location: 161030-162620 bp Feature: domain Description: asn_synth_AEB Location: 161030-162620 bp Feature: gene Location: 163582-165024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163810-164434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163810-164434 bp Feature: domain Description: GIIM Note: maturase Location: 164509-164620 bp Feature: domain Description: GIIM Note: maturase Location: 1645 09-164620 bp Feature: domain Description: GIIM Note: maturase Location: 164695-164797 bp Feature: domain Description: GIIM Note: maturase Location: 164695 -164797 bp Feature: gene Location: 165122-166642 bp Feature: domain Description: AmyAc_bac_CMD_like_2 Location: 165215-165635 bp Feature: domain Description: AmyAc_bac_CMD_like_2 Location: 165 215 -165 635 bp Feature: domain Description: AmyAc_SI_OligoGlu_DGase Location: 165656-165779 bp Feature: domain Description: AmyAc_SI_OligoGlu_DGase Location: 165 65 6-165 779 bp Feature: domain Description: PRK10785 Location: 166088-166442 bp Feature: domain Description: PRK10785 Location: 166088-166442 bp Feature: gene Location: 166689-167561 bp Feature: domain Description: PRK06701 Location: 166698-167556 bp Feature: domain Description: PRK06701 Location: 166698-1675 5 6 bp Feature: gene Location: 555853-557088 bp Feature: domain Description: PRK08210 Location: 555856-557059 bp Feature: domain Description: PRK08210 Location: 5 5 5 85 6-5 5 705 9 bp Feature: gene Location: 557196-558071 bp Feature: domain Description: DHDPS Location: 557211-558045 bp Feature: domain Description: DHDPS Location: 5 5 7211-5 5 8045 bp Feature: gene Location: 558754-560196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 558982-559606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 5 8982-5 5 9606 bp Feature: domain Description: GIIM Note: maturase Location: 559681-559792 bp Feature: domain Description: GIIM Note: maturase Location: 5 5 9681-5 5 9792 bp Feature: domain Description: GIIM Note: maturase Location: 559867-559969 bp Feature: domain Description: GIIM Note: maturase Location: 5 5 9867-5 5 9969 bp Feature: gene Location: 560491-562158 bp Feature: domain Description: RnjA Location: 560494-562150 bp Feature: domain Description: RnjA Location: 5 60494-5 6215 0 bp Feature: gene Location: 562252-563028 bp Feature: domain Description: ClpP Location: 562369-562978 bp Feature: domain Description: ClpP Location: 5 62369-5 62978 bp Feature: gene Location: 625681-626124 bp Feature: domain Description: SirA Location: 625690-626107 bp Feature: domain Description: SirA Location: 625 690-626107 bp Feature: gene Location: 626138-626413 bp Feature: domain Description: PRK01844 Location: 626210-626405 bp Feature: domain Description: PRK01844 Location: 626210-626405 bp Feature: gene Location: 627090-628532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 627318-627942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 627318-627942 bp Feature: domain Description: GIIM Note: maturase Location: 628017-628128 bp Feature: domain Description: GIIM Note: maturase Location: 628017-628128 bp Feature: domain Description: GIIM Note: maturase Location: 628203-628305 bp Feature: domain Description: GIIM Note: maturase Location: 628203-628305 bp Feature: gene Location: 628744-630495 bp Feature: domain Description: PRK10789 Location: 628810-630481 bp Feature: domain Description: PRK10789 Location: 628810-630481 bp Feature: gene Location: 630497-632290 bp Feature: domain Description: MdlB Location: 630539-632255 bp Feature: domain Description: MdlB Location: 6305 39-63225 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2777 (pfam10949), asn_synth_AEB (TIGR01536), RVT-GII, GIIM (pfam08388), AmyAc_bac_CMD_like_2 (cd11339), AmyAc_SI_OligoGlu_DGase (cd11333), PRK10785 (maltodextrin glucosidase; Provisional), PRK06701 (short chain dehydrogenase; Provisional), PRK08210 (aspartate kinase I; Reviewed), DHDPS (pfam00701)
RnjA (COG0595), ClpP (COG0740), SirA (pfam10747), PRK01844 (YneF family protein), PRK10789 (SmdA family multidrug ABC transporter permease/ATP-binding protein), MdlB (COG1132)

Seq: LN623572.1 (1735746 bp)
Overview 1 RT 1: 160655-165673 bp 2 RT 2: 767884-774001 bp 3 RT 3: 807344-811281 bp 4 RT 4: 1707725-1712263 bp Neighborhood of RT #1 [160655, 165673] spore_YtaF KOG3220 RVT-GII GIIM GIIM PRK07729 Neighborhood of RT #2 [767884, 774018] COG2928 tiny_TM_bacill RVT-GII GIIM GIIM COG2509 TrkG Neighborhood of RT #3 [807344, 811325] CspC YdjO RVT-GII GIIM GIIM TorD Neighborhood of RT #4 [1707725, 1712263] bac_cardiolipin PLDc_N RVT-GII GIIM PerM Feature: gene Location: 160655-161290 bp Feature: domain Description: spore_YtaF Location: 160673-161288 bp Feature: domain Description: spore_YtaF Location: 16 06 73-16 1288 bp Feature: gene Location: 161353-161952 bp Feature: domain Description: KOG3220 Location: 161362-161932 bp Feature: domain Description: KOG3220 Location: 16 136 2-16 1932 bp Feature: gene Location: 162639-164081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162867-163491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 286 7-16 3491 bp Feature: domain Description: GIIM Note: maturase Location: 163566-163677 bp Feature: domain Description: GIIM Note: maturase Location: 16 356 6 -16 36 77 bp Feature: domain Description: GIIM Note: maturase Location: 163752-163854 bp Feature: domain Description: GIIM Note: maturase Location: 16 3752-16 3854 bp Feature: gene Location: 164320-165351 bp Feature: domain Description: PRK07729 Location: 164323-165343 bp Feature: domain Description: PRK07729 Location: 16 4323-16 5343 bp Feature: gene Location: 165497-165673 bp Feature: gene Location: 767884-768519 bp Feature: domain Description: COG2928 Location: 767917-768490 bp Feature: domain Description: COG2928 Location: 76 7917-76 8490 bp Feature: gene Location: 768605-768754 bp Feature: domain Description: tiny_TM_bacill Location: 768671-768746 bp Feature: domain Description: tiny_TM_bacill Location: 76 86 71-76 8746 bp Feature: gene Location: 769438-770880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 769666-770290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76 96 6 6 -770290 bp Feature: domain Description: GIIM Note: maturase Location: 770365-770476 bp Feature: domain Description: GIIM Note: maturase Location: 77036 5-770476 bp Feature: domain Description: GIIM Note: maturase Location: 770551-770653 bp Feature: domain Description: GIIM Note: maturase Location: 770551-7706 53 bp Feature: gene Location: 771118-772584 bp Feature: domain Description: COG2509 Location: 771121-772552 bp Feature: domain Description: COG2509 Location: 771121-772552 bp Feature: gene Location: 772657-774018 bp Feature: domain Description: TrkG Location: 772684-774001 bp Feature: domain Description: TrkG Location: 7726 84-774001 bp Feature: gene Location: 807344-807589 bp Feature: domain Description: CspC Location: 807392-807584 bp Feature: domain Description: CspC Location: 807392-807584 bp Feature: gene Location: 807721-807933 bp Feature: domain Description: YdjO Location: 807736-807907 bp Feature: domain Description: YdjO Location: 807736 -807907 bp Feature: gene Location: 808612-810054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 808840-809464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 808840-80946 4 bp Feature: domain Description: GIIM Note: maturase Location: 809539-809650 bp Feature: domain Description: GIIM Note: maturase Location: 809539-8096 50 bp Feature: domain Description: GIIM Note: maturase Location: 809725-809827 bp Feature: domain Description: GIIM Note: maturase Location: 809725-809827 bp Feature: gene Location: 810135-810428 bp Feature: gene Location: 810660-811325 bp Feature: domain Description: TorD Location: 810708-811281 bp Feature: domain Description: TorD Location: 810708-811281 bp Feature: gene Location: 1707725-1708189 bp Feature: domain Description: bac_cardiolipin Location: 1707728-1708169 bp Feature: domain Description: bac_cardiolipin Location: 1707728-170816 9 bp Feature: gene Location: 1708194-1708406 bp Feature: domain Description: PLDc_N Location: 1708245-1708371 bp Feature: domain Description: PLDc_N Location: 1708245-1708371 bp Feature: gene Location: 1708560-1709993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1708788-1709412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1708788-1709412 bp Feature: domain Description: GIIM Note: maturase Location: 1709484-1709673 bp Feature: domain Description: GIIM Note: maturase Location: 1709484-17096 73 bp Feature: gene Location: 1710669-1711772 bp Feature: domain Description: PerM Location: 1710690-1711734 bp Feature: domain Description: PerM Location: 17106 90-1711734 bp Feature: gene Location: 1712054-1712263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT spore_YtaF (TIGR02840), KOG3220 (KOG3220, Similar to bacterial dephospho-CoA kinase ), RVT-GII, GIIM (pfam08388), PRK07729 (glyceraldehyde-3-phosphate dehydrogenase; Validated), COG2928 (Uncharacterized membrane protein ), tiny_TM_bacill (TIGR01732), COG2509 (FAD-dependent dehydrogenase ), TrkG (COG0168), CspC (COG1278)
YdjO (pfam14169), TorD (COG3381), bac_cardiolipin (TIGR04265), PLDc_N (pfam13396), PerM (COG0628)