myRT

myRT report for GCA_000820905.2_XNA1

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Seq: LN559629.1 Xenorhabdus nematophila str. Anatoliense genome assembly XNA1, scaffold XNA1_3235_scaffold9, whole genome shotgun sequence (3531 bp)
Overview 1 RT 1: 524-2136 bp Neighborhood of RT #1 [524, 2339] RVT-GII RVT-GII Recombinase Zn_ribbon_recom Feature: gene Location: 524-931 bp Feature: gene Location: 798-962 bp Ori: CEE95956.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 807-960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 807-960 bp Feature: gene Location: 1052-1225 bp Ori: CEE95957.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1055-1190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 055-1 1 90 bp Feature: gene Location: 1088-1513 bp Feature: gene Location: 1506-2339 bp Ori: CEE95959.1 Feature: domain Description: Recombinase Location: 1542-1908 bp Feature: domain Description: Recombinase Location: 1 542-1 908 bp Feature: domain Description: Zn_ribbon_recom Location: 1953-2136 bp Feature: domain Description: Zn_ribbon_recom Location: 1 953-21 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: LN560093.1 Xenorhabdus nematophila str. Anatoliense genome assembly XNA1, scaffold XNA1_3235_scaffold473, whole genome shotgun sequence (47998 bp)
Overview 1 RT 1: 18635-23727 bp Neighborhood of RT #1 [18635, 23727] MFS_MdfA_MDR_like BKR_like_SDR_like Integrase_1 RVT-GII Intron_maturas2 COG3547 Feature: gene Location: 18635-19825 bp Ori: CEE95308.1 Feature: domain Description: MFS_MdfA_MDR_like Location: 18671-19781 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 18671-19781 bp Feature: gene Location: 19877-20878 bp Ori: CEE95309.1 Feature: domain Description: BKR_like_SDR_like Location: 19898-20135 bp Feature: domain Description: BKR_like_SDR_like Location: 19898-2 0135 bp Feature: domain Description: Integrase_1 Location: 20300-20741 bp Feature: domain Description: Integrase_1 Location: 2 0300-2 0741 bp Feature: gene Location: 21287-22054 bp Ori: CEE95310.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21296-21470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 12 96-2 1470 bp Feature: domain Description: Intron_maturas2 Location: 21569-21809 bp Feature: domain Description: Intron_maturas2 Location: 2 1569-2 1809 bp Feature: gene Location: 23272-23496 bp Ori: CEE95311.1 Feature: domain Description: COG3547 Location: 23281-23422 bp Feature: domain Description: COG3547 Location: 2 32 81-2 342 2 bp Feature: gene Location: 23593-23727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MdfA_MDR_like (cd17320), BKR_like_SDR_like (cd05344), Integrase_1 (pfam12835), RVT-GII, Intron_maturas2 (pfam01348), COG3547 (Transposase )

Seq: LN559821.1 Xenorhabdus nematophila str. Anatoliense genome assembly XNA1, scaffold XNA1_3235_scaffold201, whole genome shotgun sequence (642 bp)
Overview 1 RT 1: 112-601 bp Neighborhood of RT #1 [112, 606] RVT-GII Feature: gene Location: 112-606 bp Ori: CEE91485.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115-601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115-601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LN559899.1 Xenorhabdus nematophila str. Anatoliense genome assembly XNA1, scaffold XNA1_3235_scaffold279, whole genome shotgun sequence (11282 bp)
Overview 1 RT 1: 5902-10185 bp Neighborhood of RT #1 [5902, 10185] COG4653 RVT-AbiP2 Feature: gene Location: 5902-7107 bp Ori: CEE92689.1 Feature: domain Description: COG4653 Location: 5935-7096 bp Feature: domain Description: COG4 653 Location: 5935-7096 bp Feature: gene Location: 7322-7762 bp Feature: gene Location: 7929-9473 bp Ori: CEE92691.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 8346-8799 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 834 6-8799 bp Feature: gene Location: 9506-9649 bp Feature: gene Location: 10051-10185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4653 (Predicted phage phi-C31 gp36 major capsid-like protein ), RVT-AbiP2

Seq: LN559949.1 Xenorhabdus nematophila str. Anatoliense genome assembly XNA1, scaffold XNA1_3235_scaffold329, whole genome shotgun sequence (3531 bp)
Overview 1 RT 1: 524-2136 bp Neighborhood of RT #1 [524, 2339] RVT-GII RVT-GII Recombinase Zn_ribbon_recom Feature: gene Location: 524-931 bp Feature: gene Location: 798-962 bp Ori: CEE93279.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 807-960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 807-960 bp Feature: gene Location: 1052-1225 bp Ori: CEE93280.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1055-1190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105 5 -1190 bp Feature: gene Location: 1088-1513 bp Feature: gene Location: 1506-2339 bp Ori: CEE93282.1 Feature: domain Description: Recombinase Location: 1542-1908 bp Feature: domain Description: Recombinase Location: 15 42-1908 bp Feature: domain Description: Zn_ribbon_recom Location: 1953-2136 bp Feature: domain Description: Zn_ribbon_recom Location: 195 3-2136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: LN560096.1 Xenorhabdus nematophila str. Anatoliense genome assembly XNA1, scaffold XNA1_3235_scaffold476, whole genome shotgun sequence (19714 bp)
Overview 1 RT 1: 6614-10308 bp Neighborhood of RT #1 [6614, 10340] RVT-GII Uup Uup Feature: gene Location: 6614-6838 bp Feature: gene Location: 7014-7157 bp Feature: gene Location: 7268-8125 bp Ori: CEE95380.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7691-8105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76 91-8105 bp Feature: gene Location: 8387-8572 bp Feature: gene Location: 8928-10340 bp Ori: CEE95382.1 Feature: domain Description: Uup Location: 8931-9156 bp Feature: domain Description: Uup Location: 8931-9156 bp Feature: domain Description: Uup Location: 9162-10308 bp Feature: domain Description: Uup Location: 916 2-10308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Uup (COG0488)

Seq: LN559845.1 Xenorhabdus nematophila str. Anatoliense genome assembly XNA1, scaffold XNA1_3235_scaffold225, whole genome shotgun sequence (28400 bp)
Overview 1 RT 1: 23-7157 bp Neighborhood of RT #1 [23, 7195] valS RVT-GII RVT-GII GIIM T6SS_TssF T6SS_TssF Feature: gene Location: 23-2920 bp Ori: CEE91835.1 Gene: valS Feature: domain Description: valS Location: 62-2909 bp Feature: domain Description: valS Location: 62-2909 bp Feature: gene Location: 2944-3102 bp Feature: gene Location: 3558-5216 bp Ori: CEE91837.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3723-4275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37 23-427 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4275-4854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 427 5-4854 bp Feature: domain Description: GIIM Note: maturase Location: 4992-5139 bp Feature: domain Description: GIIM Note: maturase Location: 4992-5139 bp Feature: gene Location: 5739-6413 bp Ori: CEE91838.1 Feature: domain Description: T6SS_TssF Location: 5748-6345 bp Feature: domain Description: T6SS_TssF Location: 57 48-6345 bp Feature: gene Location: 6410-7195 bp Feature: domain Description: T6SS_TssF Location: 6440-7157 bp Feature: domain Description: T6SS_TssF Location: 6440-7 157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT valS (TIGR00422), RVT-GII, GIIM (pfam08388), T6SS_TssF (pfam05947)