myRT

myRT report for GCA_000821185.1_Serratia_symbiotica

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Seq: CCES01000011.1 Serratia symbiotica genome assembly, type strain CWBI-2.3T, contig: SYMBAF_Contig_19, whole genome shotgun sequence (112999 bp)
Overview 1 RT 1: 85130-93323 bp Neighborhood of RT #1 [85130, 93373] PRK15223 RVT-GII GIIM DUF4158 DDE_Tnp_Tn3 PinE Feature: gene Location: 85130-87634 bp Ori: CDS57119.1 Gene: afaC Feature: domain Description: PRK15223 Location: 85154-87632 bp Feature: domain Description: PRK1 5223 Location: 851 54-87632 bp Feature: gene Location: 87641-87799 bp Feature: gene Location: 87744-89006 bp Ori: CDS57121.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87948-88605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87948-88605 bp Feature: domain Description: GIIM Note: maturase Location: 88686-88890 bp Feature: domain Description: GIIM Note: maturase Location: 88686-88890 bp Feature: gene Location: 89570-92599 bp Ori: CDS57122.1 Feature: domain Description: DUF4158 Location: 89600-90086 bp Feature: domain Description: DUF41 58 Location: 89600-90086 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 91358-92534 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 91 358-92534 bp Feature: gene Location: 92759-93373 bp Ori: CDS57123.1 Gene: gin Feature: domain Description: PinE Location: 92762-93323 bp Feature: domain Description: PinE Location: 92762-93323 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15223 (fimbrial biogenesis outer membrane usher protein), RVT-GII, GIIM (pfam08388), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), PinE (COG1961)

Seq: CCES01000008.1 Serratia symbiotica genome assembly, type strain CWBI-2.3T, contig: SYMBAF_Contig_16, whole genome shotgun sequence (330359 bp)
Overview 1 RT 1: 65917-70206 bp 2 RT 2: 135895-139943 bp Neighborhood of RT #1 [65917, 70214] PRK10044 RVT-GII GIIM Inhibitor_I42 HemS Neighborhood of RT #2 [135895, 139948] cyaY YifL RVT-GII GIIM DapF PRK10963 Feature: gene Location: 65917-66132 bp Gene: fhuA Feature: domain Description: PRK10044 Location: 65920-66100 bp Feature: domain Description: PRK10044 Location: 6592 0-66100 bp Feature: gene Location: 66185-66382 bp Feature: gene Location: 67264-68526 bp Ori: CDS56604.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67468-68125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67468-6812 5 bp Feature: domain Description: GIIM Note: maturase Location: 68206-68410 bp Feature: domain Description: GIIM Note: maturase Location: 682 06-68410 bp Feature: gene Location: 68637-69119 bp Ori: CDS56605.1 Feature: domain Description: Inhibitor_I42 Location: 68847-69075 bp Feature: domain Description: Inhibitor_I42 Location: 68847-69075 bp Feature: gene Location: 69186-70214 bp Ori: CDS56606.1 Gene: hemS Feature: domain Description: HemS Location: 69195-70206 bp Feature: domain Description: HemS Location: 69195-702 06 bp Feature: gene Location: 135895-136215 bp Ori: CDS56684.1 Gene: cyaY Feature: domain Description: cyaY Location: 135898-136210 bp Feature: domain Description: cyaY Location: 135898-1362 10 bp Feature: gene Location: 136267-136521 bp Ori: CDS56685.1 Feature: domain Description: YifL Location: 136297-136462 bp Feature: domain Description: YifL Location: 1362 97-136462 bp Feature: gene Location: 136532-137794 bp Ori: CDS56686.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136736-137393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136736-137393 bp Feature: domain Description: GIIM Note: maturase Location: 137474-137678 bp Feature: domain Description: GIIM Note: maturase Location: 137474-137678 bp Feature: gene Location: 138423-139247 bp Ori: CDS56687.1 Gene: dapF Feature: domain Description: DapF Location: 138426-139242 bp Feature: domain Description: DapF Location: 13842 6-1392 42 bp Feature: gene Location: 139244-139948 bp Ori: CDS56688.1 Gene: yigA Feature: domain Description: PRK10963 Location: 139283-139943 bp Feature: domain Description: PRK10963 Location: 1392 83-139943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10044 (ferrichrome outer membrane transporter; Provisional), RVT-GII, GIIM (pfam08388), Inhibitor_I42 (pfam09394), HemS (pfam05171), cyaY (PRK01379), YifL (COG5567), DapF (TIGR00652), PRK10963 (hypothetical protein; Provisional)

Seq: CCES01000015.1 Serratia symbiotica genome assembly, type strain CWBI-2.3T, contig: SYMBAF_Contig_22, whole genome shotgun sequence (18331 bp)
Overview 1 RT 1: 1429-6964 bp Neighborhood of RT #1 [1429, 6964] RVT-GII GIIM PRK15370 NEL Feature: gene Location: 1429-2691 bp Ori: CDS57592.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1633-2290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163 3 -2290 bp Feature: domain Description: GIIM Note: maturase Location: 2371-2575 bp Feature: domain Description: GIIM Note: maturase Location: 23 71-2575 bp Feature: gene Location: 2902-5073 bp Ori: CDS57593.1 Feature: domain Description: PRK15370 Location: 2944-3493 bp Feature: domain Description: PRK153 70 Location: 2944-3 493 bp Feature: domain Description: NEL Location: 3697-4291 bp Feature: domain Description: NEL Location: 3 697-4291 bp Feature: gene Location: 5918-6964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK15370 (type III secretion system effector E3 ubiquitin transferase SlrP), NEL (pfam14496)

Seq: CCES01000014.1 Serratia symbiotica genome assembly, type strain CWBI-2.3T, contig: SYMBAF_Contig_21, whole genome shotgun sequence (65226 bp)
Overview 1 RT 1: 18-8053 bp Neighborhood of RT #1 [18, 8244] GIIM RVT-GII RVT-GII GIIM PRK15370 PRK15370 HTH_29 rve Feature: gene Location: 18-275 bp Ori: CDS57547.1 Feature: domain Description: GIIM Note: maturase Location: 24-159 bp Feature: domain Description: GIIM Note: maturase Location: 24 -159 bp Feature: gene Location: 577-699 bp Feature: gene Location: 893-1021 bp Ori: CDS57549.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 896-980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 896-980 bp Feature: gene Location: 2555-3817 bp Ori: CDS57550.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2759-3416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2759-34 16 bp Feature: domain Description: GIIM Note: maturase Location: 3497-3701 bp Feature: domain Description: GIIM Note: maturase Location: 34 97-3701 bp Feature: gene Location: 4510-6987 bp Ori: CDS57551.1 Feature: domain Description: PRK15370 Location: 4552-5098 bp Feature: domain Description: PRK15370 Location: 4 552-5098 bp Feature: domain Description: PRK15370 Location: 5125-6091 bp Feature: domain Description: PRK15370 Location: 5125-6091 bp Feature: gene Location: 7204-8244 bp Ori: CDS57552.1 Feature: domain Description: HTH_29 Location: 7237-7423 bp Feature: domain Description: HTH_29 Location: 7237-74 23 bp Feature: domain Description: rve Location: 7687-8053 bp Feature: domain Description: rve Location: 7687-8053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, PRK15370 (type III secretion system effector E3 ubiquitin transferase SlrP), HTH_29 (pfam13551), rve (pfam00665)

Seq: CCES01000001.1 Serratia symbiotica genome assembly, type strain CWBI-2.3T, contig: SYMBAF_Contig_1, whole genome shotgun sequence (236822 bp)
Overview 1 RT 1: 167725-174249 bp Neighborhood of RT #1 [167725, 174257] IAT_beta PRK11107 RVT-GII InsE PHA02517 RVT-GII GIIM PRK11107 PRK11107 Feature: gene Location: 167725-168267 bp Ori: CDS55596.1 Feature: domain Description: IAT_beta Location: 167881-168142 bp Feature: domain Description: IAT_beta Location: 167881-168142 bp Feature: gene Location: 168413-170188 bp Gene: barA Feature: domain Description: PRK11107 Location: 168512-170165 bp Feature: domain Description: PRK11107 Location: 1685 12-170165 bp Feature: gene Location: 170629-171027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170833-171013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170833-171013 bp Feature: gene Location: 171084-171386 bp Ori: CDS55599.1 Gene: insN Feature: domain Description: InsE Location: 171093-171375 bp Feature: domain Description: InsE Location: 171093-171375 bp Feature: gene Location: 171431-172252 bp Ori: CDS55600.1 Gene: insO Feature: domain Description: PHA02517 Location: 171437-172241 bp Feature: domain Description: PHA025 17 Location: 171437-172241 bp Feature: gene Location: 172280-173143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172283-172742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172283-172742 bp Feature: domain Description: GIIM Note: maturase Location: 172823-173027 bp Feature: domain Description: GIIM Note: maturase Location: 172823-173027 bp Feature: gene Location: 173154-173756 bp Gene: barA Feature: domain Description: PRK11107 Location: 173157-173718 bp Feature: domain Description: PRK11107 Location: 17315 7-173718 bp Feature: gene Location: 173760-174257 bp Gene: barA Feature: domain Description: PRK11107 Location: 173763-174249 bp Feature: domain Description: PRK11107 Location: 173763-174249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IAT_beta (pfam11924), PRK11107 (hybrid sensory histidine kinase BarA; Provisional), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388)

Seq: CCES01000027.1 Serratia symbiotica genome assembly, type strain CWBI-2.3T, contig: SYMBAF_Contig_4, whole genome shotgun sequence (64909 bp)
Overview 1 RT 1: 31207-35393 bp Neighborhood of RT #1 [31207, 35404] COG3547 DDE_Tnp_Tn3 RVT-GII GIIM InsE PHA02517 Feature: gene Location: 31207-32229 bp Ori: CDS57883.1 Feature: domain Description: COG3547 Location: 31222-32188 bp Feature: domain Description: COG3547 Location: 31222-32188 bp Feature: gene Location: 32384-33559 bp Ori: CDS57884.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 32456-33539 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 32456 -33539 bp Feature: gene Location: 33584-34129 bp Ori: CDS57885.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33602-33728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336 02-33728 bp Feature: domain Description: GIIM Note: maturase Location: 33809-34013 bp Feature: domain Description: GIIM Note: maturase Location: 33809-34013 bp Feature: gene Location: 34236-34538 bp Ori: CDS57886.1 Gene: insN Feature: domain Description: InsE Location: 34245-34527 bp Feature: domain Description: InsE Location: 34245-34527 bp Feature: gene Location: 34583-35404 bp Ori: CDS57887.1 Gene: insO Feature: domain Description: PHA02517 Location: 34589-35393 bp Feature: domain Description: PHA02517 Location: 34589-35393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)