myRT

myRT report for GCA_000824845.1_Illumina_paired_reads_assembly_ORS3359

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Seq: CCNC01000209.1 Mesorhizobium sp. ORS3359 genome assembly Illumina paired reads assembly ORS3359, contig MPLAv1_Contig_94, whole genome shotgun sequence (19110 bp)
Overview 1 RT 1: 13797-16988 bp Neighborhood of RT #1 [13797, 16988] KOG1270 MmsB NAD_binding_11 RVT-GII Feature: gene Location: 13797-14504 bp Ori: CDX47013.1 Feature: domain Description: KOG1270 Location: 13995-14391 bp Feature: domain Description: KOG1 270 Location: 1 3995-1 4391 bp Feature: gene Location: 14504-15820 bp Ori: CDX47014.1 Feature: domain Description: MmsB Location: 14537-15362 bp Feature: domain Description: MmsB Location: 1 4537-1 5362 bp Feature: domain Description: NAD_binding_11 Location: 15596-15740 bp Feature: domain Description: NAD_binding_1 1 Location: 1 5596-1 5740 bp Feature: gene Location: 16485-16649 bp Ori: CDX47015.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16488-16602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6488-1 6602 bp Feature: gene Location: 16643-17017 bp Feature: gene Location: 16698-16988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1270 (KOG1270, Methyltransferases ), MmsB (COG2084), NAD_binding_11 (pfam14833), RVT-GII

Seq: CCNC01000009.1 Mesorhizobium sp. ORS3359 genome assembly Illumina paired reads assembly ORS3359, contig MPLAv1_Contig_106, whole genome shotgun sequence (8767 bp)
Overview 1 RT 1: 24-3304 bp Neighborhood of RT #1 [24, 3304] RVT-UG13 Feature: gene Location: 24-551 bp Feature: gene Location: 545-1072 bp Feature: gene Location: 1135-2925 bp Ori: CDX13752.1 Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 1549-2017 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 1549-2 017 bp Feature: gene Location: 2876-3079 bp Feature: gene Location: 3044-3304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG13

Seq: CCNC01000193.1 Mesorhizobium sp. ORS3359 genome assembly Illumina paired reads assembly ORS3359, contig MPLAv1_Contig_8, whole genome shotgun sequence (51618 bp)
Overview 1 RT 1: 6-6942 bp Neighborhood of RT #1 [6, 7439] TIGR00004 COG4748 RVT-UG12 carB SH3_3 Feature: gene Location: 6-398 bp Ori: CDX45733.1 Gene: yjgF Feature: domain Description: TIGR00004 Location: 69-393 bp Feature: domain Description: TIGR00004 Location: 69-3 93 bp Feature: gene Location: 500-1288 bp Ori: CDX45735.1 Feature: domain Description: COG4748 Location: 599-1037 bp Feature: domain Description: COG4748 Location: 599-103 7 bp Feature: gene Location: 1306-2922 bp Ori: CDX45737.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1678-2116 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1678-2116 bp Feature: gene Location: 2947-6450 bp Ori: CDX45739.1 Gene: carB Feature: domain Description: carB Location: 2950-6442 bp Feature: domain Description: carB Location: 2950-6442 bp Feature: gene Location: 6636-7439 bp Ori: CDX45741.1 Feature: domain Description: SH3_3 Location: 6774-6942 bp Feature: domain Description: SH3 _3 Location: 6774-6942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR00004 (reactive intermediate/imine deaminase), COG4748 (Uncharacterized protein, contains restriction enzyme R protein N terminal (HSDR_N) domain ), RVT-UG12, carB (PRK12815), SH3_3 (pfam08239)