myRT

myRT report for GCA_000828075.2_ASM82807v2

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Seq: JXCB01000013.1 Tolypothrix campylonemoides VB511288 scaffold_7, whole genome shotgun sequence (263526 bp)
Overview 1 RT 1: 53533-59510 bp Neighborhood of RT #1 [53533, 59510] Sipho_Gp157 Tn7_Tnp_TnsA_N RVT-GII GIIM KOG4768 DUF2281 Feature: gene Location: 53533-54135 bp Ori: KIJ73149.1 Feature: domain Description: Sipho_Gp157 Location: 53572-54052 bp Feature: domain Description: Sipho_Gp1 57 Location: 53572-54052 bp Feature: gene Location: 54774-55463 bp Ori: KIJ73150.1 Feature: domain Description: Tn7_Tnp_TnsA_N Location: 54852-55119 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 54852-551 1 9 bp Feature: gene Location: 55926-57608 bp Ori: KIJ73151.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56208-56892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56208-56892 bp Feature: domain Description: GIIM Note: maturase Location: 56961-57171 bp Feature: domain Description: GIIM Note: maturase Location: 56961 -571 71 bp Feature: domain Description: KOG4768 Location: 57453-57507 bp Feature: domain Description: KOG4768 Location: 57453-57507 bp Feature: gene Location: 59011-59235 bp Ori: KIJ73152.1 Feature: domain Description: DUF2281 Location: 59035-59131 bp Feature: domain Description: DUF2281 Location: 59035-591 31 bp Feature: gene Location: 59319-59510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sipho_Gp157 (pfam05565), Tn7_Tnp_TnsA_N (pfam08722), RVT-GII, GIIM (pfam08388), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), DUF2281 (pfam10047)

Seq: JXCB01000002.1 Tolypothrix campylonemoides VB511288 scaffold_6, whole genome shotgun sequence (297094 bp)
Overview 1 RT 1: 274588-278312 bp Neighborhood of RT #1 [274588, 278341] CitB RVT_N RVT-GII RVT-GII McrA Feature: gene Location: 274588-275256 bp Ori: KIJ79603.1 Feature: domain Description: CitB Location: 274594-275230 bp Feature: domain Description: CitB Location: 2 74594-2 752 30 bp Feature: gene Location: 275284-275715 bp Feature: gene Location: 276830-278341 bp Ori: KIJ79605.1 Feature: domain Description: RVT_N Location: 276866-277112 bp Feature: domain Description: RVT_N Location: 2 76866-2 77112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277163-277589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 77163-2 77589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277589-277757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 77589-2 77757 bp Feature: domain Description: McrA Location: 278009-278312 bp Feature: domain Description: McrA Location: 2 78009-2 78312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CitB (TIGR02484), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: JXCB01000004.1 Tolypothrix campylonemoides VB511288 scaffold_0, whole genome shotgun sequence (1728859 bp)
Overview 1 RT 1: 316859-331144 bp 2 RT 2: 1562884-1575507 bp Neighborhood of RT #1 [316859, 331191] YsnF PRK12467 PRK12467 EntF RVT_N RVT-GII GIIM McrA S4_2 PRK12467 AdoMet_MTases McyA_C PRK12467 Neighborhood of RT #2 [1562884, 1575536] MauG MauG MauG MiaE RVT_N RVT-GII GIIM McrA RVT_N RVT-GII RVT-GII GIIM McrA Nterm_IS4 DDE_Tnp_1 YcjU Feature: gene Location: 316859-317770 bp Ori: KIJ78354.1 Feature: domain Description: YsnF Location: 317093-317762 bp Feature: domain Description: YsnF Location: 3 17093 -3 17762 bp Feature: gene Location: 318072-322226 bp Ori: KIJ78355.1 Feature: domain Description: PRK12467 Location: 318156-319872 bp Feature: domain Description: PRK12467 Location: 3 18156-3 19872 bp Feature: domain Description: PRK12467 Location: 319941-321336 bp Feature: domain Description: PRK12467 Location: 3 19941-3 213 3 6 bp Feature: domain Description: EntF Location: 321390-322215 bp Feature: domain Description: EntF Location: 3 213 90-3 22215 bp Feature: gene Location: 323472-325277 bp Ori: KIJ79237.1 Feature: domain Description: RVT_N Location: 323505-323751 bp Feature: domain Description: RVT_N Location: 3 23 505-3 23 751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323793-324477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 23 793 -3 24477 bp Feature: domain Description: GIIM Note: maturase Location: 324582-324813 bp Feature: domain Description: GIIM Note: maturase Location: 3 24582-3 24813 bp Feature: domain Description: McrA Location: 324903-325173 bp Feature: domain Description: McrA Location: 3 24903 -3 25173 bp Feature: gene Location: 326186-326389 bp Ori: KIJ78356.1 Feature: domain Description: S4_2 Location: 326198-326378 bp Feature: domain Description: S4_2 Location: 3 26198-3 263 78 bp Feature: gene Location: 326437-331191 bp Ori: KIJ78357.1 Feature: domain Description: PRK12467 Location: 326590-329479 bp Feature: domain Description: PRK12467 Location: 3 26590-3 29479 bp Feature: domain Description: AdoMet_MTases Location: 329677-330007 bp Feature: domain Description: AdoMet_MTases Location: 3 29677-3 3 0007 bp Feature: domain Description: McyA_C Location: 330577-330682 bp Feature: domain Description: McyA_C Location: 3 3 0577-3 3 0682 bp Feature: domain Description: PRK12467 Location: 330688-331144 bp Feature: domain Description: PRK12467 Location: 3 3 0688-3 3 1144 bp Feature: gene Location: 1562884-1565058 bp Ori: KIJ79320.1 Feature: domain Description: MauG Location: 1562941-1563172 bp Feature: domain Description: MauG Location: 1562941-1563 172 bp Feature: domain Description: MauG Location: 1563460-1563733 bp Feature: domain Description: MauG Location: 1563 460-1563 73 3 bp Feature: domain Description: MauG Location: 1564204-1564861 bp Feature: domain Description: MauG Location: 1564204-1564861 bp Feature: gene Location: 1565861-1566460 bp Ori: KIJ79109.1 Feature: domain Description: MiaE Location: 1565879-1566458 bp Feature: domain Description: MiaE Location: 1565879-1566458 bp Feature: gene Location: 1566684-1568471 bp Ori: KIJ79321.1 Feature: domain Description: RVT_N Location: 1566696-1566942 bp Feature: domain Description: RVT_N Location: 1566696-1566942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1566984-1567680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1566984-1567680 bp Feature: domain Description: GIIM Note: maturase Location: 1567767-1567992 bp Feature: domain Description: GIIM Note: maturase Location: 1567767-1567992 bp Feature: domain Description: McrA Location: 1568088-1568358 bp Feature: domain Description: McrA Location: 1568088-15683 58 bp Feature: gene Location: 1569771-1571282 bp Ori: KIJ79322.1 Feature: domain Description: RVT_N Location: 1569807-1570053 bp Feature: domain Description: RVT_N Location: 1569807-1570053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1570104-1570530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1570104-157053 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1570533-1570698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157053 3 -1570698 bp Feature: domain Description: GIIM Note: maturase Location: 1570755-1570932 bp Feature: domain Description: GIIM Note: maturase Location: 1570755-157093 2 bp Feature: domain Description: McrA Location: 1570941-1571253 bp Feature: domain Description: McrA Location: 1570941-1571253 bp Feature: gene Location: 1571637-1572863 bp Ori: KIJ79110.1 Feature: domain Description: Nterm_IS4 Location: 1571709-1571982 bp Feature: domain Description: Nterm_IS4 Location: 1571709-1571982 bp Feature: domain Description: DDE_Tnp_1 Location: 1572039-1572711 bp Feature: domain Description: DDE_Tnp_1 Location: 157203 9-1572711 bp Feature: gene Location: 1574847-1575536 bp Ori: KIJ79323.1 Feature: domain Description: YcjU Location: 1574862-1575507 bp Feature: domain Description: YcjU Location: 1574862-1575507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YsnF (COG3861), PRK12467 (peptide synthase; Provisional), EntF (COG3319), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), S4_2 (pfam13275), AdoMet_MTases (cl17173), McyA_C (pfam12593)
MauG (COG1858), MiaE (pfam06175), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), YcjU (COG0637)

Seq: JXCB01000011.1 Tolypothrix campylonemoides VB511288 scaffold_9, whole genome shotgun sequence (143715 bp)
Overview 1 RT 1: 2208-14882 bp 2 RT 2: 24615-32337 bp Neighborhood of RT #1 [2208, 15031] Tn7_Tnp_TnsA_N rve Mu-transpos_C AAA_16 RVT-CRISPR cas1 YadD DDE_Tnp_1_3 Neighborhood of RT #2 [24615, 32337] DUF4277 RVT_N RVT-GII GIIM HNHc COG3293 Feature: gene Location: 2208-4757 bp Ori: KIJ74365.1 Feature: domain Description: Tn7_Tnp_TnsA_N Location: 2439-2709 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 24 39-2709 bp Feature: domain Description: rve Location: 3570-3960 bp Feature: domain Description: rve Location: 3570-3960 bp Feature: domain Description: Mu-transpos_C Location: 4251-4395 bp Feature: domain Description: Mu-transpos_C Location: 4 251-4 395 bp Feature: gene Location: 6587-10171 bp Ori: KIJ74366.1 Feature: domain Description: AAA_16 Location: 6926-7355 bp Feature: domain Description: AAA_16 Location: 6926-7355 bp Feature: gene Location: 10446-12452 bp Ori: KIJ74367.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 10635-11241 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 10635-1124 1 bp Feature: domain Description: cas1 Location: 11457-12423 bp Feature: domain Description: cas1 Location: 114 57-124 23 bp Feature: gene Location: 13843-14088 bp Ori: KIJ74368.1 Feature: domain Description: YadD Location: 13849-14083 bp Feature: domain Description: YadD Location: 1384 9-14 083 bp Feature: gene Location: 14105-15031 bp Ori: KIJ74369.1 Feature: domain Description: DDE_Tnp_1_3 Location: 14423-14882 bp Feature: domain Description: DDE_Tnp_1_3 Location: 14 4 23-14 882 bp Feature: gene Location: 24615-24932 bp Ori: KIJ74375.1 Feature: domain Description: DUF4277 Location: 24627-24918 bp Feature: domain Description: DUF4 277 Location: 24 627-24 918 bp Feature: gene Location: 24984-25355 bp Feature: gene Location: 27308-28966 bp Ori: KIJ74377.1 Feature: domain Description: RVT_N Location: 27356-27599 bp Feature: domain Description: RVT_N Location: 27356-27599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27650-28289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27650-28289 bp Feature: domain Description: GIIM Note: maturase Location: 28361-28595 bp Feature: domain Description: GIIM Note: maturase Location: 28361-28595 bp Feature: domain Description: HNHc Note: nucleases Location: 28793-28958 bp Feature: domain Description: HNHc Note: nucleases Location: 28793-28958 bp Feature: gene Location: 30542-30931 bp Ori: KIJ74378.1 Feature: domain Description: COG3293 Location: 30545-30920 bp Feature: domain Description: COG3293 Location: 3054 5-30920 bp Feature: gene Location: 31333-32337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tn7_Tnp_TnsA_N (pfam08722), rve (pfam00665), Mu-transpos_C (pfam09299), AAA_16 (pfam13191), RVT-CRISPR, cas1 (TIGR00287), YadD (COG5464), DDE_Tnp_1_3 (pfam13612), DUF4277 (pfam14104), RVT_N (pfam13655)
RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG3293 (Transposase )