myRT

myRT report for GCA_000828075.3_ASM82807v3

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Seq: JXCB02000044.1 (297094 bp)
Overview 1 RT 1: 274588-279364 bp Neighborhood of RT #1 [274588, 279364] CitB RVT_N RVT-GII RVT-GII McrA Feature: gene Location: 274588-275256 bp Ori: KAB8314696.1 Feature: domain Description: CitB Location: 274594-275230 bp Feature: domain Description: CitB Location: 274594-275230 bp Feature: gene Location: 275284-275715 bp Feature: gene Location: 276830-278341 bp Ori: KAB8314698.1 Feature: domain Description: RVT_N Location: 276866-277112 bp Feature: domain Description: RVT_N Location: 276866-2771 1 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277163-277589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2771 63-277589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277589-277757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277589-277757 bp Feature: domain Description: McrA Location: 278009-278312 bp Feature: domain Description: McrA Location: 278009-27831 2 bp Feature: gene Location: 278426-278795 bp Feature: gene Location: 278947-279364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CitB (TIGR02484), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: JXCB02000048.1 (263526 bp)
Overview 1 RT 1: 53533-59740 bp 2 RT 2: 136894-147740 bp Neighborhood of RT #1 [53533, 59740] Sipho_Gp157 Tn7_Tnp_TnsA_N RVT-GII GIIM KOG4768 RVT-GII DUF2281 Neighborhood of RT #2 [136894, 147754] OmpR BaeS RVT_N RVT-GII RVT-GII RVT-GII GIIM McrA TIGR03943 ZntA ZntA Feature: gene Location: 53533-54135 bp Ori: KAB8314294.1 Feature: domain Description: Sipho_Gp157 Location: 53572-54052 bp Feature: domain Description: Sipho_Gp157 Location: 53572 -54052 bp Feature: gene Location: 54774-55616 bp Ori: KAB8314295.1 Feature: domain Description: Tn7_Tnp_TnsA_N Location: 55005-55272 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 55005-552 72 bp Feature: gene Location: 55926-57608 bp Ori: KAB8314296.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56208-56892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 562 08-56892 bp Feature: domain Description: GIIM Note: maturase Location: 56961-57171 bp Feature: domain Description: GIIM Note: maturase Location: 56961-57171 bp Feature: domain Description: KOG4768 Location: 57453-57507 bp Feature: domain Description: KOG4768 Location: 57453-57507 bp Feature: gene Location: 58238-58540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58241-58541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 582 41-58541 bp Feature: gene Location: 59011-59235 bp Ori: KAB8314297.1 Feature: domain Description: DUF2281 Location: 59035-59131 bp Feature: domain Description: DUF2 2 81 Location: 59035-59131 bp Feature: gene Location: 59459-59740 bp Feature: gene Location: 136894-137589 bp Ori: KAB8314361.1 Feature: domain Description: OmpR Location: 136897-137578 bp Feature: domain Description: OmpR Location: 136897-137578 bp Feature: gene Location: 137586-138974 bp Ori: KAB8314362.1 Feature: domain Description: BaeS Location: 138036-138927 bp Feature: domain Description: BaeS Location: 138036-13892 7 bp Feature: gene Location: 140059-140844 bp Feature: domain Description: RVT_N Location: 140101-140347 bp Feature: domain Description: RVT_N Location: 140101-140347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140389-140845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140389-140845 bp Feature: gene Location: 141429-143226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141690-142110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141690-142 110 bp Feature: gene Location: 143330-144238 bp Ori: KAB8314363.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143333-143489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143333-143489 bp Feature: domain Description: GIIM Note: maturase Location: 143591-143822 bp Feature: domain Description: GIIM Note: maturase Location: 143591-14382 2 bp Feature: domain Description: McrA Location: 143873-144188 bp Feature: domain Description: McrA Location: 143873-144188 bp Feature: gene Location: 144563-145327 bp Ori: KAB8314364.1 Feature: domain Description: TIGR03943 Location: 144668-145319 bp Feature: domain Description: TIGR03943 Location: 144668-145319 bp Feature: gene Location: 145355-147754 bp Ori: KAB8314365.1 Gene: cadA Feature: domain Description: ZntA Location: 145385-145586 bp Feature: domain Description: ZntA Location: 145385-145586 bp Feature: domain Description: ZntA Location: 145607-147740 bp Feature: domain Description: ZntA Location: 145607-147740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sipho_Gp157 (pfam05565), Tn7_Tnp_TnsA_N (pfam08722), RVT-GII, GIIM (pfam08388), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), DUF2281 (pfam10047), OmpR (COG0745), BaeS (COG0642), RVT_N (pfam13655), McrA (COG4058)
TIGR03943 (TIGR03943 family protein), ZntA (COG2217)

Seq: JXCB02000058.1 (143715 bp)
Overview 1 RT 1: 4947-14876 bp 2 RT 2: 25633-30920 bp Neighborhood of RT #1 [4947, 15025] RsmA AAA_16 RVT-CRISPR cas1 YadD DDE_Tnp_1_3 Neighborhood of RT #2 [25633, 30931] YhhI DEDD_Tnp_IS110 RVT_N RVT-GII GIIM HNHc DEDD_Tnp_IS110 COG3293 COG3293 Feature: gene Location: 4947-5927 bp Ori: KAB8313847.1 Feature: domain Description: RsmA Location: 5535-5805 bp Feature: domain Description: RsmA Location: 553 5-5805 bp Feature: gene Location: 6587-10171 bp Ori: KAB8313848.1 Feature: domain Description: AAA_16 Location: 6926-7355 bp Feature: domain Description: AAA_16 Location: 6926-73 55 bp Feature: gene Location: 10446-12452 bp Ori: KAB8313849.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 10635-11241 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1063 5-11241 bp Feature: domain Description: cas1 Location: 11457-12423 bp Feature: domain Description: cas1 Location: 11457-12423 bp Feature: gene Location: 13843-14082 bp Feature: domain Description: YadD Location: 13849-14080 bp Feature: domain Description: YadD Location: 13 849-14080 bp Feature: gene Location: 14105-15025 bp Ori: KAB8313931.1 Feature: domain Description: DDE_Tnp_1_3 Location: 14417-14876 bp Feature: domain Description: DDE_Tnp_1_3 Location: 14417-14876 bp Feature: gene Location: 25633-25878 bp Feature: domain Description: YhhI Location: 25636-25765 bp Feature: domain Description: YhhI Location: 2563 6-25765 bp Feature: gene Location: 26194-26625 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 26263-26620 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 26263 -26620 bp Feature: gene Location: 27308-28966 bp Ori: KAB8313856.1 Gene: ltrA Feature: domain Description: RVT_N Location: 27356-27599 bp Feature: domain Description: RVT_N Location: 273 56-27599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27650-28289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27650-28289 bp Feature: domain Description: GIIM Note: maturase Location: 28361-28595 bp Feature: domain Description: GIIM Note: maturase Location: 283 61-28595 bp Feature: domain Description: HNHc Note: nucleases Location: 28793-28958 bp Feature: domain Description: HNHc Note: nucleases Location: 28793 -28958 bp Feature: gene Location: 29240-29999 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 29309-29552 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 293 09-29552 bp Feature: gene Location: 30116-30931 bp Feature: domain Description: COG3293 Location: 30134-30437 bp Feature: domain Description: COG3 293 Location: 3 013 4-3 043 7 bp Feature: domain Description: COG3293 Location: 30530-30920 bp Feature: domain Description: COG3 293 Location: 3 053 0-3 0920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RsmA (COG0030), AAA_16 (pfam13191), RVT-CRISPR, cas1 (TIGR00287), YadD (COG5464), DDE_Tnp_1_3 (pfam13612), YhhI (COG5433), DEDD_Tnp_IS110 (pfam01548), RVT_N (pfam13655), RVT-GII
GIIM (pfam08388), HNHc (smart00507), COG3293 (Transposase )

Seq: JXCB02000001.1 (1728859 bp)
Overview 1 RT 1: 318072-326378 bp 2 RT 2: 825688-829378 bp 3 RT 3: 1565657-1573230 bp Neighborhood of RT #1 [318072, 326389] PRK12467 PRK12467 EntF RVT_N RVT-GII GIIM McrA InsQ S4_2 Neighborhood of RT #2 [825688, 829386] devC SPS1 RVT-GII OrfB_IS605 AHP1 GlrX-dom Neighborhood of RT #3 [1565657, 1573230] FosA MiaE RVT_N RVT-GII GIIM McrA InsQ RVT_N RVT-GII RVT-GII GIIM McrA Nterm_IS4 DDE_Tnp_1 Feature: gene Location: 318072-322226 bp Ori: KAB8320292.1 Feature: domain Description: PRK12467 Location: 318156-319872 bp Feature: domain Description: PRK124 67 Location: 318156-319872 bp Feature: domain Description: PRK12467 Location: 319941-321336 bp Feature: domain Description: PRK124 67 Location: 31994 1-321336 bp Feature: domain Description: EntF Location: 321390-322215 bp Feature: domain Description: EntF Location: 321390-322215 bp Feature: gene Location: 322306-322842 bp Feature: gene Location: 323472-325277 bp Ori: KAB8321246.1 Gene: ltrA Feature: domain Description: RVT_N Location: 323505-323751 bp Feature: domain Description: RVT_N Location: 323505-323751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323793-324477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323793-324 4 77 bp Feature: domain Description: GIIM Note: maturase Location: 324582-324813 bp Feature: domain Description: GIIM Note: maturase Location: 324 582-324 813 bp Feature: domain Description: McrA Location: 324903-325173 bp Feature: domain Description: McrA Location: 324 903-325173 bp Feature: gene Location: 325372-325983 bp Feature: domain Description: InsQ Location: 325462-325903 bp Feature: domain Description: InsQ Location: 3254 62-325903 bp Feature: gene Location: 326186-326389 bp Ori: KAB8320293.1 Feature: domain Description: S4_2 Location: 326198-326378 bp Feature: domain Description: S4 _2 Location: 326198-326378 bp Feature: gene Location: 825688-825810 bp Feature: domain Description: devC Location: 825706-825811 bp Feature: domain Description: devC Location: 825706-825811 bp Feature: gene Location: 825962-827425 bp Ori: KAB8320634.1 Feature: domain Description: SPS1 Location: 826001-827129 bp Feature: domain Description: SPS1 Location: 826001-827129 bp Feature: gene Location: 827413-827559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 827428-827560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8274 28-827560 bp Feature: gene Location: 827890-828622 bp Feature: domain Description: OrfB_IS605 Location: 827911-828142 bp Feature: domain Description: OrfB_IS605 Location: 827911-82814 2 bp Feature: gene Location: 828652-829386 bp Ori: KAB8320635.1 Feature: domain Description: AHP1 Location: 828664-829141 bp Feature: domain Description: AHP1 Location: 828664 -82914 1 bp Feature: domain Description: GlrX-dom Location: 829144-829378 bp Feature: domain Description: GlrX-dom Location: 82914 4 -829378 bp Feature: gene Location: 1565657-1565836 bp Ori: KAB8321112.1 Feature: domain Description: FosA Location: 1565669-1565804 bp Feature: domain Description: FosA Location: 1565669-1565804 bp Feature: gene Location: 1565861-1566460 bp Ori: KAB8321113.1 Feature: domain Description: MiaE Location: 1565879-1566458 bp Feature: domain Description: MiaE Location: 1565879-15664 58 bp Feature: gene Location: 1566684-1568471 bp Ori: KAB8321337.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1566696-1566942 bp Feature: domain Description: RVT_N Location: 1566696-156694 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1566984-1567680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1566984 -1567680 bp Feature: domain Description: GIIM Note: maturase Location: 1567767-1567992 bp Feature: domain Description: GIIM Note: maturase Location: 1567767-1567992 bp Feature: domain Description: McrA Location: 1568088-1568358 bp Feature: domain Description: McrA Location: 1568088-1568358 bp Feature: gene Location: 1569350-1569685 bp Feature: domain Description: InsQ Location: 1569371-1569683 bp Feature: domain Description: InsQ Location: 1569371-1569683 bp Feature: gene Location: 1569771-1571282 bp Ori: KAB8321114.1 Feature: domain Description: RVT_N Location: 1569807-1570053 bp Feature: domain Description: RVT_N Location: 1569807-1570053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1570104-1570530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1570104 -1570530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1570533-1570698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1570533-1570698 bp Feature: domain Description: GIIM Note: maturase Location: 1570755-1570932 bp Feature: domain Description: GIIM Note: maturase Location: 1570755-1570932 bp Feature: domain Description: McrA Location: 1570941-1571253 bp Feature: domain Description: McrA Location: 157094 1-1571253 bp Feature: gene Location: 1571712-1572863 bp Ori: KAB8321338.1 Feature: domain Description: Nterm_IS4 Location: 1571718-1571982 bp Feature: domain Description: Nterm_IS4 Location: 1571718-1571982 bp Feature: domain Description: DDE_Tnp_1 Location: 1572039-1572711 bp Feature: domain Description: DDE_Tnp_1 Location: 1572039-1572711 bp Feature: gene Location: 1573036-1573230 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12467 (peptide synthase; Provisional), EntF (COG3319), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), InsQ (COG0675), S4_2 (pfam13275), devC (TIGR01185), SPS1 (COG0515)
OrfB_IS605 (pfam01385), AHP1 (COG0678), GlrX-dom (TIGR02190), FosA (cd07244), MiaE (pfam06175), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609)

Seq: JXCB02000002.1 (1701383 bp)
Overview 1 RT 1: 1013343-1020662 bp Neighborhood of RT #1 [1013343, 1020662] Peptidase_S41_TRI CSLREA_Nterm GlyGly_RbtA GlyGly_RbtA GlyGly_RbtA RVT_N RVT-GII YkfC HNHc Feature: gene Location: 1013343-1014620 bp Ori: KAB8319449.1 Feature: domain Description: Peptidase_S41_TRI Location: 1013466-1014606 bp Feature: domain Description: Peptidase_S41_TRI Location: 1013466-1014606 bp Feature: gene Location: 1015454-1016971 bp Ori: KAB8319450.1 Feature: domain Description: CSLREA_Nterm Location: 1015601-1015679 bp Feature: domain Description: CSLREA_Nterm Location: 1015 601-1015 679 bp Feature: domain Description: GlyGly_RbtA Location: 1016111-1016234 bp Feature: domain Description: GlyGly_RbtA Location: 1016111-1016234 bp Feature: domain Description: GlyGly_RbtA Location: 1016333-1016477 bp Feature: domain Description: GlyGly_RbtA Location: 1016333-1016477 bp Feature: domain Description: GlyGly_RbtA Location: 1016501-1016609 bp Feature: domain Description: GlyGly_RbtA Location: 10165 01-1016609 bp Feature: gene Location: 1017585-1019153 bp Ori: KAB8319451.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1017645-1017888 bp Feature: domain Description: RVT_N Location: 1017645 -1017888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1017930-1018584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1017930-10185 84 bp Feature: domain Description: YkfC Location: 1018758-1018884 bp Feature: domain Description: YkfC Location: 101875 8-1018884 bp Feature: gene Location: 1019044-1019274 bp Ori: KAB8320021.1 Feature: domain Description: HNHc Note: nucleases Location: 1019092-1019254 bp Feature: domain Description: HNHc Note: nucleases Location: 1019092-101925 4 bp Feature: gene Location: 1019525-1020662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S41_TRI (cd07562), CSLREA_Nterm (TIGR04214), GlyGly_RbtA (TIGR04212), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: JXCB02000003.1 (109637 bp)
Overview 1 RT 1: 3672-8576 bp Neighborhood of RT #1 [3672, 8576] DUF2281 RVT_N RVT-GII RVT-GII zf-IS66 DDE_Tnp_IS66 Feature: gene Location: 3672-4265 bp Feature: gene Location: 4472-4696 bp Ori: KAB8318651.1 Feature: domain Description: DUF2281 Location: 4496-4592 bp Feature: domain Description: DUF2281 Location: 4496 -4592 bp Feature: gene Location: 5242-6174 bp Ori: KAB8318652.1 Feature: domain Description: RVT_N Location: 5278-5518 bp Feature: domain Description: RVT_N Location: 5278-5518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5575-5995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5575-5995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6004-6154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 004-6 154 bp Feature: gene Location: 6571-8106 bp Ori: KAB8318653.1 Feature: domain Description: zf-IS66 Location: 6913-7051 bp Feature: domain Description: zf-IS6 6 Location: 6 913-7051 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7099-7939 bp Feature: domain Description: DDE_Tnp_IS6 6 Location: 7099-7939 bp Feature: gene Location: 8333-8576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2281 (pfam10047), RVT_N (pfam13655), RVT-GII, zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)