myRT

myRT report for GCA_000828085.2_ASM82808v2

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Seq: JXCA01000013.1 Scytonema tolypothrichoides VB-61278 scaffold_11, whole genome shotgun sequence (121028 bp)
Overview 1 RT 1: 94722-98223 bp Neighborhood of RT #1 [94722, 98267] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 94722-95144 bp Feature: gene Location: 96483-98267 bp Ori: KIJ81561.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96744-97539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96744-97539 bp Feature: domain Description: Intron_maturas2 Location: 97641-97881 bp Feature: domain Description: Intron_maturas2 Location: 97641 -97881 bp Feature: domain Description: HNHc Note: nucleases Location: 98058-98223 bp Feature: domain Description: HNHc Note: nucleases Location: 98058-98223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JXCA01000015.1 Scytonema tolypothrichoides VB-61278 scaffold_7, whole genome shotgun sequence (502309 bp)
Overview 1 RT 1: 3073-6946 bp Neighborhood of RT #1 [3073, 7209] DDE_3 RVT-GII GIIM TniQ TnsD COG5659 Feature: gene Location: 3073-3360 bp Feature: gene Location: 3355-3840 bp Ori: KIJ80774.1 Feature: domain Description: DDE_3 Location: 3397-3712 bp Feature: domain Description: DDE_3 Location: 3397-3712 bp Feature: gene Location: 4800-5315 bp Ori: KIJ80425.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4803-4947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4803-4947 bp Feature: domain Description: GIIM Note: maturase Location: 5001-5202 bp Feature: domain Description: GIIM Note: maturase Location: 5001-52 02 bp Feature: gene Location: 5439-6296 bp Ori: KIJ80426.1 Feature: domain Description: TniQ Location: 5514-5820 bp Feature: domain Description: TniQ Location: 5514-582 0 bp Feature: domain Description: TnsD Location: 5955-6279 bp Feature: domain Description: TnsD Location: 5955-62 79 bp Feature: gene Location: 6745-7209 bp Ori: KIJ80427.1 Feature: domain Description: COG5659 Location: 6763-6946 bp Feature: domain Description: COG5659 Location: 6763-6946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388), TniQ (pfam06527), TnsD (pfam15978), COG5659 (SRSO17 transposase )

Seq: JXCA01000008.1 Scytonema tolypothrichoides VB-61278 scaffold_3, whole genome shotgun sequence (659030 bp)
Overview 1 RT 1: 372020-379296 bp Neighborhood of RT #1 [372020, 379301] DUF4090 RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII PRK00148 PsbP Feature: gene Location: 372020-372409 bp Feature: gene Location: 372720-373025 bp Ori: KIJ83855.1 Feature: domain Description: DUF4090 Location: 372762-373011 bp Feature: domain Description: DUF4090 Location: 3 72762-3 73 011 bp Feature: gene Location: 374433-376217 bp Ori: KIJ83856.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374694-375489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 74694-3 75489 bp Feature: domain Description: Intron_maturas2 Location: 375591-375831 bp Feature: domain Description: Intron_maturas2 Location: 3 75591-3 7583 1 bp Feature: domain Description: HNHc Note: nucleases Location: 376008-376173 bp Feature: domain Description: HNHc Note: nucleases Location: 3 76008-3 76173 bp Feature: gene Location: 376709-377296 bp Ori: KIJ84037.1 Feature: domain Description: RVT_N Location: 376763-377009 bp Feature: domain Description: RVT_N Location: 3 76763 -3 77009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377051-377282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 77051-3 77282 bp Feature: gene Location: 378129-378719 bp Ori: KIJ83857.1 Feature: domain Description: PRK00148 Location: 378144-378717 bp Feature: domain Description: PRK00148 Location: 3 78144-3 78717 bp Feature: gene Location: 378759-379301 bp Ori: KIJ84038.1 Feature: domain Description: PsbP Location: 378843-379296 bp Feature: domain Description: PsbP Location: 3 78843 -3 79296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4090 (pfam13319), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RVT_N (pfam13655), PRK00148 (Maf-like protein; Reviewed), PsbP (pfam01789)

Seq: JXCA01000009.1 Scytonema tolypothrichoides VB-61278 scaffold_8, whole genome shotgun sequence (482348 bp)
Overview 1 RT 1: 181268-183008 bp Neighborhood of RT #1 [181268, 183052] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 181268-183052 bp Ori: KIJ83371.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181529-182324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181529-182324 bp Feature: domain Description: Intron_maturas2 Location: 182426-182666 bp Feature: domain Description: Intron_maturas2 Location: 1824 26-182666 bp Feature: domain Description: HNHc Note: nucleases Location: 182843-183008 bp Feature: domain Description: HNHc Note: nucleases Location: 18284 3-183008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JXCA01000014.1 Scytonema tolypothrichoides VB-61278 scaffold_2, whole genome shotgun sequence (914713 bp)
Overview 1 RT 1: 517077-522544 bp Neighborhood of RT #1 [517077, 522588] PreP RVT-GII Intron_maturas2 HNHc Feature: gene Location: 517077-517358 bp Feature: gene Location: 517419-519470 bp Ori: KIJ81467.1 Feature: domain Description: PreP Location: 517479-519435 bp Feature: domain Description: PreP Location: 5 17479-5 19435 bp Feature: gene Location: 520804-522588 bp Ori: KIJ81157.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521065-521860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 21065 -5 21860 bp Feature: domain Description: Intron_maturas2 Location: 521962-522202 bp Feature: domain Description: Intron_maturas2 Location: 5 21962-5 22202 bp Feature: domain Description: HNHc Note: nucleases Location: 522379-522544 bp Feature: domain Description: HNHc Note: nucleases Location: 5 22379-5 225 44 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PreP (COG1505), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JXCA01000026.1 Scytonema tolypothrichoides VB-61278 scaffold_159, whole genome shotgun sequence (5706 bp)
Overview 1 RT 1: 2837-5440 bp Neighborhood of RT #1 [2837, 5469] ParM_like RVT_N RVT-GII RVT-GII McrA Feature: gene Location: 2837-3103 bp Feature: gene Location: 3213-3905 bp Ori: KIJ80112.1 Feature: domain Description: ParM_like Location: 3300-3885 bp Feature: domain Description: ParM_like Location: 3300-3885 bp Feature: gene Location: 3958-5469 bp Ori: KIJ80113.1 Feature: domain Description: RVT_N Location: 3994-4240 bp Feature: domain Description: RVT_N Location: 3994-4240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4291-4717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4291-4717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4720-4885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4720-4885 bp Feature: domain Description: McrA Location: 5116-5440 bp Feature: domain Description: McrA Location: 5116 -5440 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParM_like (cd10227), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: JXCA01000005.1 Scytonema tolypothrichoides VB-61278 scaffold_6, whole genome shotgun sequence (556160 bp)
Overview 1 RT 1: 397192-402396 bp Neighborhood of RT #1 [397192, 402404] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR SpoT TIGR03985 Feature: gene Location: 397192-397467 bp Ori: KIJ85406.1 Feature: domain Description: Cas2_I_II_III Location: 397201-397432 bp Feature: domain Description: Cas2_I_II_III Location: 397 201-397 432 bp Feature: gene Location: 397614-398618 bp Ori: KIJ85527.1 Feature: domain Description: Cas1_I-II-III Location: 397626-398580 bp Feature: domain Description: Cas1_I-II-III Location: 397 626-398580 bp Feature: gene Location: 398870-399850 bp Ori: KIJ85407.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 399077-399683 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 39907 7 -399683 bp Feature: gene Location: 399843-400442 bp Ori: KIJ85408.1 Feature: domain Description: SpoT Location: 399867-400344 bp Feature: domain Description: SpoT Location: 399867 -400344 bp Feature: gene Location: 400887-402404 bp Ori: KIJ85409.1 Feature: domain Description: TIGR03985 Location: 401625-402396 bp Feature: domain Description: TIGR03985 Location: 401625-402396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR, SpoT (COG0317), TIGR03985 (CRISPR-associated protein, TIGR03985 family)