myRT

myRT report for GCA_000828085.3_ASM82808v3

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Seq: JXCA02000027.1 (502309 bp)
Overview 1 RT 1: 3355-6946 bp Neighborhood of RT #1 [3355, 7209] DDE_3 KOG4768 RVT-GII GIIM TniQ TnsD COG5659 Feature: gene Location: 3355-3852 bp Feature: domain Description: DDE_3 Location: 3379-3724 bp Feature: domain Description: DDE_3 Location: 3379-3724 bp Feature: gene Location: 4111-4824 bp Feature: domain Description: KOG4768 Location: 4189-4789 bp Feature: domain Description: KOG4768 Location: 41 89-4789 bp Feature: gene Location: 4800-5315 bp Ori: KAB8330455.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4803-4947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4803-4947 bp Feature: domain Description: GIIM Note: maturase Location: 5001-5202 bp Feature: domain Description: GIIM Note: maturase Location: 5001 -5202 bp Feature: gene Location: 5439-6296 bp Ori: KAB8330456.1 Feature: domain Description: TniQ Location: 5514-5820 bp Feature: domain Description: TniQ Location: 551 4-5820 bp Feature: domain Description: TnsD Location: 5955-6279 bp Feature: domain Description: TnsD Location: 5955-6279 bp Feature: gene Location: 6745-7209 bp Ori: KAB8330457.1 Feature: domain Description: COG5659 Location: 6763-6946 bp Feature: domain Description: COG5659 Location: 6763-6946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), RVT-GII, GIIM (pfam08388), TniQ (pfam06527), TnsD (pfam15978), COG5659 (SRSO17 transposase )

Seq: JXCA02000019.1 (659030 bp)
Overview 1 RT 1: 372020-379296 bp Neighborhood of RT #1 [372020, 379301] DUF4090 RVT-GII GIIM McrA RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII PRK00148 PsbP Feature: gene Location: 372020-372409 bp Feature: gene Location: 372720-373025 bp Ori: KAB8332572.1 Feature: domain Description: DUF4090 Location: 372762-373011 bp Feature: domain Description: DUF4090 Location: 372 762 -373011 bp Feature: gene Location: 373110-374318 bp Ori: KAB8332573.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373113-373539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373113-373539 bp Feature: domain Description: GIIM Note: maturase Location: 373647-373872 bp Feature: domain Description: GIIM Note: maturase Location: 373647-373872 bp Feature: domain Description: McrA Location: 373959-374292 bp Feature: domain Description: McrA Location: 373959-3742 92 bp Feature: gene Location: 374433-376217 bp Ori: KAB8332574.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374694-375489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374694-375489 bp Feature: domain Description: Intron_maturas2 Location: 375591-375831 bp Feature: domain Description: Intron_maturas2 Location: 375591-375831 bp Feature: domain Description: HNHc Note: nucleases Location: 376008-376173 bp Feature: domain Description: HNHc Note: nucleases Location: 376008-376173 bp Feature: gene Location: 376709-377353 bp Ori: KAB8332575.1 Feature: domain Description: RVT_N Location: 376820-377066 bp Feature: domain Description: RVT_N Location: 37682 0-377066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377108-377339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377108-377339 bp Feature: gene Location: 378129-378719 bp Ori: KAB8332576.1 Feature: domain Description: PRK00148 Location: 378144-378717 bp Feature: domain Description: PRK00148 Location: 378144-378717 bp Feature: gene Location: 378759-379301 bp Ori: KAB8332769.1 Feature: domain Description: PsbP Location: 378843-379296 bp Feature: domain Description: PsbP Location: 378843-3792 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4090 (pfam13319), RVT-GII, GIIM (pfam08388), McrA (COG4058), Intron_maturas2 (pfam01348), HNHc (smart00507), RVT_N (pfam13655), PRK00148 (Maf-like protein; Reviewed), PsbP (pfam01789)

Seq: JXCA02000012.1 (5706 bp)
Overview 1 RT 1: 2837-5440 bp Neighborhood of RT #1 [2837, 5469] ParM_like RVT_N RVT-GII RVT-GII McrA Feature: gene Location: 2837-3103 bp Feature: gene Location: 3213-3905 bp Ori: KAB8333579.1 Feature: domain Description: ParM_like Location: 3300-3885 bp Feature: domain Description: ParM_like Location: 3 3 00-3 885 bp Feature: gene Location: 3958-5469 bp Ori: KAB8333580.1 Feature: domain Description: RVT_N Location: 3994-4240 bp Feature: domain Description: RVT_N Location: 3 994-4240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4291-4717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4291-4717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4720-4885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4720-4885 bp Feature: domain Description: McrA Location: 5116-5440 bp Feature: domain Description: McrA Location: 5116-5440 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParM_like (cd10227), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: JXCA02000005.1 (121028 bp)
Overview 1 RT 1: 94331-100438 bp Neighborhood of RT #1 [94331, 100438] RVT_N RVT-GII RVT-GII Intron_maturas2 HNHc RVT-GII RVT-GII McrA Feature: gene Location: 94331-94597 bp Feature: gene Location: 94722-95144 bp Feature: gene Location: 95404-95991 bp Ori: KAB8333863.1 Feature: domain Description: RVT_N Location: 95440-95680 bp Feature: domain Description: RVT_N Location: 954 4 0-95680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95737-95977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95737-95977 bp Feature: gene Location: 96483-98267 bp Ori: KAB8333864.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96744-97539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9674 4 -97539 bp Feature: domain Description: Intron_maturas2 Location: 97641-97881 bp Feature: domain Description: Intron_maturas2 Location: 9764 1-97881 bp Feature: domain Description: HNHc Note: nucleases Location: 98058-98223 bp Feature: domain Description: HNHc Note: nucleases Location: 98058-98223 bp Feature: gene Location: 98400-99359 bp Ori: KAB8333865.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98409-98559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 984 09-98559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98565-98730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98565-98730 bp Feature: domain Description: McrA Location: 98961-99312 bp Feature: domain Description: McrA Location: 98961-99312 bp Feature: gene Location: 99404-99688 bp Feature: gene Location: 99778-100438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), McrA (COG4058)

Seq: JXCA02000016.1 (914713 bp)
Overview 1 RT 1: 516684-525601 bp Neighborhood of RT #1 [516684, 525601] PreP RVT-GII GIIM McrA RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII Feature: gene Location: 516684-516914 bp Feature: gene Location: 517419-519560 bp Ori: KAB8333198.1 Feature: domain Description: PreP Location: 517569-519525 bp Feature: domain Description: PreP Location: 5 175 69-5 195 25 bp Feature: gene Location: 519694-520671 bp Ori: KAB8333199.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 519703-520087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 19703-5 20087 bp Feature: domain Description: GIIM Note: maturase Location: 520144-520303 bp Feature: domain Description: GIIM Note: maturase Location: 5 20144-5 20303 bp Feature: domain Description: McrA Location: 520342-520642 bp Feature: domain Description: McrA Location: 5 20342-5 20642 bp Feature: gene Location: 520804-522588 bp Ori: KAB8333200.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521065-521860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 21065 -5 21860 bp Feature: domain Description: Intron_maturas2 Location: 521962-522202 bp Feature: domain Description: Intron_maturas2 Location: 5 21962-5 22202 bp Feature: domain Description: HNHc Note: nucleases Location: 522379-522544 bp Feature: domain Description: HNHc Note: nucleases Location: 5 22379-5 225 44 bp Feature: gene Location: 523080-523667 bp Ori: KAB8333201.1 Feature: domain Description: RVT_N Location: 523116-523356 bp Feature: domain Description: RVT_N Location: 5 23116-5 2335 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 523413-523653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 23413-5 2365 3 bp Feature: gene Location: 524915-525292 bp Feature: gene Location: 525314-525601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PreP (COG1505), RVT-GII, GIIM (pfam08388), McrA (COG4058), Intron_maturas2 (pfam01348), HNHc (smart00507), RVT_N (pfam13655)

Seq: JXCA02000030.1 (482348 bp)
Overview 1 RT 1: 174940-187268 bp Neighborhood of RT #1 [174940, 187312] GstA VioB VioB RVT_N RVT-GII RVT-GII Intron_maturas2 HNHc RVT-GII McrA MFS_YfmO_like Feature: gene Location: 174940-175614 bp Ori: KAB8330180.1 Feature: domain Description: GstA Location: 174943-175540 bp Feature: domain Description: GstA Location: 174943-175540 bp Feature: gene Location: 175761-179117 bp Ori: KAB8330181.1 Feature: domain Description: VioB Location: 175764-177147 bp Feature: domain Description: VioB Location: 17576 4-177147 bp Feature: domain Description: VioB Location: 177486-179097 bp Feature: domain Description: VioB Location: 177486 -179097 bp Feature: gene Location: 180189-180776 bp Ori: KAB8330182.1 Feature: domain Description: RVT_N Location: 180225-180465 bp Feature: domain Description: RVT_N Location: 180225-18046 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180522-180762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180522-18076 2 bp Feature: gene Location: 181268-183052 bp Ori: KAB8330183.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181529-182324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181529-182324 bp Feature: domain Description: Intron_maturas2 Location: 182426-182666 bp Feature: domain Description: Intron_maturas2 Location: 182426 -1826 6 6 bp Feature: domain Description: HNHc Note: nucleases Location: 182843-183008 bp Feature: domain Description: HNHc Note: nucleases Location: 182843-183008 bp Feature: gene Location: 183185-184099 bp Ori: KAB8330184.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183191-183515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183191-183515 bp Feature: domain Description: McrA Location: 183755-184070 bp Feature: domain Description: McrA Location: 183755-184070 bp Feature: gene Location: 185351-185470 bp Feature: gene Location: 186086-187312 bp Ori: KAB8330185.1 Feature: domain Description: MFS_YfmO_like Location: 186155-187268 bp Feature: domain Description: MFS_YfmO_like Location: 186 155-18726 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GstA (COG0625), VioB (TIGR04492), RVT_N (pfam13655), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), McrA (COG4058), MFS_YfmO_like (cd17474)

Seq: JXCA02000024.1 (556160 bp)
Overview 1 RT 1: 397192-402396 bp Neighborhood of RT #1 [397192, 402404] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR SpoT TIGR03985 Feature: gene Location: 397192-397467 bp Ori: KAB8331157.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 397201-397432 bp Feature: domain Description: Cas2_I_II_III Location: 397 201-397 432 bp Feature: gene Location: 397614-398618 bp Ori: KAB8331302.1 Gene: cas1 Feature: domain Description: Cas1_I-II-III Location: 397626-398580 bp Feature: domain Description: Cas1_I-II-III Location: 397 626-398580 bp Feature: gene Location: 398870-399850 bp Ori: KAB8331158.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 399077-399683 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 39907 7 -399683 bp Feature: gene Location: 399843-400442 bp Ori: KAB8331159.1 Feature: domain Description: SpoT Location: 399867-400344 bp Feature: domain Description: SpoT Location: 399867 -400344 bp Feature: gene Location: 400887-402404 bp Ori: KAB8331160.1 Feature: domain Description: TIGR03985 Location: 401625-402396 bp Feature: domain Description: TIGR03985 Location: 401625-402396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR, SpoT (COG0317), TIGR03985 (CRISPR-associated protein, TIGR03985 family)