myRT

myRT report for GCA_000828245.1_ASM82824v1

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Seq: JXBS01000002.1 Clostridioides difficile strain LIBA-5784 .11940_2_72.2, whole genome shotgun sequence (402162 bp)
Overview 1 RT 1: 389746-395528 bp Neighborhood of RT #1 [389746, 395542] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc PldB Hydrolase_4 ArdA Feature: gene Location: 389746-390918 bp Feature: domain Description: HTH_XRE Location: 389752-389887 bp Feature: domain Description: HTH_XRE Location: 389752-389887 bp Feature: domain Description: Rol_Rep_N Location: 389926-390187 bp Feature: domain Description: Rol_Rep_N Location: 389926-3901 87 bp Feature: domain Description: Rep_trans Location: 390211-390826 bp Feature: domain Description: Rep_trans Location: 39021 1 -390826 bp Feature: gene Location: 390926-391060 bp Feature: domain Description: DUF3789 Location: 390938-391031 bp Feature: domain Description: DUF3789 Location: 390938-391 031 bp Feature: gene Location: 391802-393712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392135-392873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3921 35-392873 bp Feature: domain Description: HNHc Note: nucleases Location: 393428-393593 bp Feature: domain Description: HNHc Note: nucleases Location: 393428-393593 bp Feature: gene Location: 394125-394727 bp Feature: domain Description: PldB Location: 394293-394410 bp Feature: domain Description: PldB Location: 394293-39441 0 bp Feature: domain Description: Hydrolase_4 Location: 394410-394683 bp Feature: domain Description: Hydrolase_4 Location: 39441 0-394683 bp Feature: gene Location: 395039-395542 bp Feature: domain Description: ArdA Location: 395099-395528 bp Feature: domain Description: ArdA Location: 395099-395528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), RVT-GII, HNHc (smart00507), PldB (COG2267), Hydrolase_4 (pfam12146), ArdA (pfam07275)

Seq: JXBS01000005.1 Clostridioides difficile strain LIBA-5784 .11940_2_72.5, whole genome shotgun sequence (235752 bp)
Overview 1 RT 1: 49950-57200 bp Neighborhood of RT #1 [49950, 57259] Lysozyme_like Spr RVT-GII Intron_maturas2 HNHc TpcC AcrR TetR_C_33 Feature: gene Location: 49950-52154 bp Feature: gene Location: 52151-53083 bp Feature: domain Description: Lysozyme_like Location: 52298-52760 bp Feature: domain Description: Lysozyme_like Location: 52 2 98-52 760 bp Feature: domain Description: Spr Location: 52793-53066 bp Feature: domain Description: Spr Location: 52 793-53066 bp Feature: gene Location: 53704-55500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53971-54781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53971-54781 bp Feature: domain Description: Intron_maturas2 Location: 54847-55186 bp Feature: domain Description: Intron_maturas2 Location: 54847-55186 bp Feature: domain Description: HNHc Note: nucleases Location: 55318-55474 bp Feature: domain Description: HNHc Note: nucleases Location: 55318-55474 bp Feature: gene Location: 55744-56655 bp Feature: domain Description: TpcC Location: 55978-56647 bp Feature: domain Description: TpcC Location: 55978-56647 bp Feature: gene Location: 56702-57259 bp Feature: domain Description: AcrR Location: 56711-56912 bp Feature: domain Description: AcrR Location: 56711-56912 bp Feature: domain Description: TetR_C_33 Location: 56957-57200 bp Feature: domain Description: TetR_C_33 Location: 56957-572 00 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lysozyme_like (pfam13702), Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TpcC (pfam12642), AcrR (COG1309), TetR_C_33