myRT

myRT report for GCA_000829455.1_ASM82945v1

Download annotations/find similar RTs

Seq: JXAK01000106.1 Paenibacillus sp. VKM B-2647 B-2647_106, whole genome shotgun sequence (11586 bp)
Overview 1 RT 1: 830-7164 bp Neighborhood of RT #1 [830, 7164] HTH_XRE RVT-GII Intron_maturas2 HNHc TrbC Feature: gene Location: 830-1015 bp Feature: gene Location: 1185-1436 bp Ori: KIL36573.1 Feature: domain Description: HTH_XRE Location: 1245-1416 bp Feature: domain Description: HTH_XRE Location: 1 245-1 41 6 bp Feature: gene Location: 1616-3457 bp Ori: KIL36581.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1880-2720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 880-2720 bp Feature: domain Description: Intron_maturas2 Location: 2792-3083 bp Feature: domain Description: Intron_maturas2 Location: 2792-3083 bp Feature: domain Description: HNHc Note: nucleases Location: 3281-3428 bp Feature: domain Description: HNHc Note: nucleases Location: 3281 -3428 bp Feature: gene Location: 4931-5236 bp Ori: KIL36574.1 Feature: domain Description: TrbC Location: 4934-5204 bp Feature: domain Description: TrbC Location: 4934-5204 bp Feature: gene Location: 6973-7164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TrbC (pfam04956)

Seq: JXAK01000138.1 Paenibacillus sp. VKM B-2647 B-2647_138, whole genome shotgun sequence (1908 bp)
Overview 1 RT 1: 86-1331 bp Neighborhood of RT #1 [86, 1501] RVT-GII GIIM Feature: gene Location: 86-1501 bp Ori: KIL34707.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437-1055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437-1055 bp Feature: domain Description: GIIM Note: maturase Location: 1112-1331 bp Feature: domain Description: GIIM Note: maturase Location: 1112 -1331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JXAK01000004.1 Paenibacillus sp. VKM B-2647 B-2647_004, whole genome shotgun sequence (190041 bp)
Overview 1 RT 1: 181605-188697 bp Neighborhood of RT #1 [181605, 188906] DUF5367 RVT-UNC FliA HTH_LUXR HTH_28 rve Mu-transpos_C Feature: gene Location: 181605-181979 bp Ori: KIL42041.1 Feature: domain Description: DUF5367 Location: 181701-181974 bp Feature: domain Description: DUF53 67 Location: 181701-181974 bp Feature: gene Location: 182164-184653 bp Feature: gene Location: 184713-185549 bp Ori: KIL42025.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 184965-185505 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 184965-185505 bp Feature: gene Location: 185777-186724 bp Ori: KIL42026.1 Feature: domain Description: FliA Location: 185780-186317 bp Feature: domain Description: FliA Location: 185780-1863 17 bp Feature: domain Description: HTH_LUXR Location: 186422-186497 bp Feature: domain Description: HTH_LUXR Location: 186422-186497 bp Feature: gene Location: 187554-188906 bp Ori: KIL42027.1 Feature: domain Description: HTH_28 Location: 187641-187767 bp Feature: domain Description: HTH_28 Location: 187641-187767 bp Feature: domain Description: rve Location: 188010-188355 bp Feature: domain Description: rve Location: 188010-1883 55 bp Feature: domain Description: Mu-transpos_C Location: 188553-188697 bp Feature: domain Description: Mu-transpos_C Location: 188553 -188697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5367 (pfam17329), RVT-UG24/RVT-UG19(RVT-UNC), FliA (COG1191), HTH_LUXR (smart00421), HTH_28 (pfam13518), rve (pfam00665), Mu-transpos_C (pfam09299)