myRT

myRT report for GCA_000829545.2_ASM82954v2

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Seq: CM003134.1 Enterococcus gallinarum strain A6981 plasmid pA6981, complete sequence, whole genome shotgun sequence (35608 bp)
Overview 1 RT 1: 8277-12593 bp Neighborhood of RT #1 [8277, 12598] Rve Transposase_mut RVT-AbiP2 Tra8 PinE Feature: gene Location: 8277-8957 bp Ori: KIL80815.1 Gene: tpn Feature: domain Description: Rve Location: 8280-8928 bp Feature: domain Description: Rve Location: 8280-8928 bp Feature: gene Location: 8991-9584 bp Ori: KJR67400.1 Gene: tpn Feature: domain Description: Transposase_mut Location: 9012-9564 bp Feature: domain Description: Transposase_mut Location: 901 2-9564 bp Feature: gene Location: 9673-10461 bp Ori: KJR67401.1 Gene: corA Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 10021-10438 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 0021 -1 0438 bp Feature: gene Location: 10439-11392 bp Ori: KIL80816.1 Gene: int Feature: domain Description: Tra8 Location: 10442-11369 bp Feature: domain Description: Tra8 Location: 1 0442-1 1 369 bp Feature: gene Location: 12035-12598 bp Ori: KIL80817.1 Gene: res(tn917) Feature: domain Description: PinE Location: 12047-12593 bp Feature: domain Description: PinE Location: 1 2047-1 2593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), Transposase_mut (pfam00872), RVT-AbiP2, Tra8 (COG2826), PinE (COG1961)

Seq: JMGP01000001.1 Enterococcus gallinarum strain A6981 contig001, whole genome shotgun sequence (458023 bp)
Overview 1 RT 1: 398378-412477 bp 2 RT 2: 421586-426168 bp Neighborhood of RT #1 [398378, 412494] DUF3801 VirD4 RVT-GII HNHc TraG-D_C Maff2 PrgI TraC-F-type RVT-GII Intron_maturas2 Spr Neighborhood of RT #2 [421586, 426203] HTH_16 Relaxase RVT-GII Intron_maturas2 HNHc Relaxase Feature: gene Location: 398378-398854 bp Ori: KIX84326.1 Feature: domain Description: DUF3801 Location: 398435-398825 bp Feature: domain Description: DUF3801 Location: 398435-39882 5 bp Feature: gene Location: 398851-399903 bp Ori: KIX84327.1 Feature: domain Description: VirD4 Location: 399031-399886 bp Feature: domain Description: VirD4 Location: 399031-399886 bp Feature: gene Location: 400652-402556 bp Ori: KIL83512.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400967-401699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400967-401699 bp Feature: domain Description: HNHc Note: nucleases Location: 402278-402446 bp Feature: domain Description: HNHc Note: nucleases Location: 402 2 78-402 446 bp Feature: gene Location: 402688-403449 bp Ori: KIL83513.1 Feature: domain Description: TraG-D_C Location: 402865-403216 bp Feature: domain Description: TraG-D_C Location: 402 865-4032 16 bp Feature: gene Location: 403526-403741 bp Ori: KIL83514.1 Feature: domain Description: Maff2 Location: 403529-403736 bp Feature: domain Description: Maff2 Location: 40352 9-403736 bp Feature: gene Location: 405283-405705 bp Ori: KIL83565.1 Feature: domain Description: PrgI Location: 405301-405571 bp Feature: domain Description: PrgI Location: 405301-405571 bp Feature: gene Location: 405776-407803 bp Ori: KIL83517.2 Feature: domain Description: TraC-F-type Location: 406439-407765 bp Feature: domain Description: TraC-F-type Location: 406439-407765 bp Feature: gene Location: 408297-410087 bp Ori: KIL83518.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408564-409377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408564-409377 bp Feature: domain Description: Intron_maturas2 Location: 409461-409758 bp Feature: domain Description: Intron_maturas2 Location: 409461-409758 bp Feature: gene Location: 410196-410414 bp Feature: gene Location: 410503-412494 bp Ori: KIL83520.1 Feature: domain Description: Spr Location: 412126-412477 bp Feature: domain Description: Spr Location: 412 12 6-412 477 bp Feature: gene Location: 421586-421822 bp Ori: KIL83527.1 Feature: domain Description: HTH_16 Location: 421616-421808 bp Feature: domain Description: HTH_16 Location: 42 1616-42 1808 bp Feature: gene Location: 422373-423356 bp Ori: KIX84328.1 Feature: domain Description: Relaxase Location: 422379-422748 bp Feature: domain Description: Relaxase Location: 42 2 379-42 2 748 bp Feature: gene Location: 423494-425296 bp Ori: KIL83528.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423764-424577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 3764-42 4577 bp Feature: domain Description: Intron_maturas2 Location: 424733-424952 bp Feature: domain Description: Intron_maturas2 Location: 42 4733-42 4952 bp Feature: domain Description: HNHc Note: nucleases Location: 425126-425276 bp Feature: domain Description: HNHc Note: nucleases Location: 42 512 6-42 52 76 bp Feature: gene Location: 425417-425632 bp Feature: gene Location: 425841-426203 bp Ori: KIL83530.1 Feature: domain Description: Relaxase Location: 425871-426168 bp Feature: domain Description: Relaxase Location: 42 5871-42 6168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, HNHc (smart00507), TraG-D_C (pfam12696), Maff2 (pfam12750), PrgI (pfam12666), TraC-F-type (TIGR02746), Intron_maturas2 (pfam01348), Spr (COG0791)
HTH_16 (pfam12645), Relaxase (pfam03432)