myRT

myRT report for GCA_000833655.1_ASM83365v1

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Seq: JTHH01000004.1 Bacillus thuringiensis serovar morrisoni strain HD 600 BG10.Contig147, whole genome shotgun sequence (75167 bp)
Overview 1 RT 1: 8204-11349 bp 2 RT 2: 17264-21155 bp 3 RT 3: 24145-26977 bp Neighborhood of RT #1 [8204, 11349] DDE_Tnp_Tn3 RVT-GII GIIM Neighborhood of RT #2 [17264, 21155] DDE_Tnp_1 RVT-GII GIIM Neighborhood of RT #3 [24145, 26977] RVT-GII GIIM Feature: gene Location: 8204-9013 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 8351-8945 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 8351 -8945 bp Feature: gene Location: 9162-9353 bp Feature: gene Location: 9689-10996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9974-10613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9974-1 061 3 bp Feature: domain Description: GIIM Note: maturase Location: 10688-10913 bp Feature: domain Description: GIIM Note: maturase Location: 1 0688-1 091 3 bp Feature: gene Location: 11030-11173 bp Feature: gene Location: 11170-11349 bp Feature: gene Location: 17264-18700 bp Feature: domain Description: DDE_Tnp_1 Location: 17621-18419 bp Feature: domain Description: DDE_Tnp_1 Location: 1 7621 -1 841 9 bp Feature: gene Location: 18968-19159 bp Feature: gene Location: 19495-20802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19780-20419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9780-2041 9 bp Feature: domain Description: GIIM Note: maturase Location: 20494-20719 bp Feature: domain Description: GIIM Note: maturase Location: 20494-2071 9 bp Feature: gene Location: 20836-20979 bp Feature: gene Location: 20976-21155 bp Feature: gene Location: 24145-24324 bp Feature: gene Location: 24321-24464 bp Feature: gene Location: 24498-25805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24783-25422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24783-25422 bp Feature: domain Description: GIIM Note: maturase Location: 25497-25722 bp Feature: domain Description: GIIM Note: maturase Location: 25497-25722 bp Feature: gene Location: 26030-26341 bp Feature: gene Location: 26612-26977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609)

Seq: JTHH01000008.1 Bacillus thuringiensis serovar morrisoni strain HD 600 BG10.Contig244, whole genome shotgun sequence (6767421 bp)
Overview 1 RT 1: 177506-183555 bp 2 RT 2: 314879-320532 bp 3 RT 3: 893782-902975 bp 4 RT 4: 1229025-1234816 bp 5 RT 5: 1535044-1542055 bp 6 RT 6: 1698553-1708848 bp 7 RT 7: 1732075-1736696 bp 8 RT 8: 1811170-1819781 bp 9 RT 9: 2059662-2066503 bp 10 RT 10: 3033605-3037453 bp 11 RT 11: 3406191-3410218 bp 12 RT 12: 3605628-3610552 bp 13 RT 13: 3693469-3706567 bp 14 RT 14: 3799661-3810591 bp 15 RT 15: 3822949-3827643 bp 16 RT 16: 3831504-3837179 bp 17 RT 17: 3840976-3844710 bp 18 RT 18: 3943595-3947893 bp 19 RT 19: 4360447-4365168 bp 20 RT 20: 4848665-4867255 bp 21 RT 21: 4922337-4926640 bp 22 RT 22: 4984832-4993878 bp 23 RT 23: 5031739-5040011 bp 24 RT 24: 5245498-5253893 bp 25 RT 25: 5627514-5634988 bp 26 RT 26: 5644998-5651425 bp 27 RT 27: 5706193-5712503 bp 28 RT 28: 6759120-6764316 bp Neighborhood of RT #1 [177506, 183575] YpfH PcpA_C_like RVT-GII HNHc PcpA_N_like PcpA_C_like Na_Pro_sym Neighborhood of RT #2 [314879, 320532] TatD_DNAse RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #3 [893782, 902975] metH PRK08645 RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #4 [1229025, 1234827] spo_ytxC DUF4177 RVT-GII GIIM DDE_Tnp_1 PHA02517 Neighborhood of RT #5 [1535044, 1542055] COG3503 Lysozyme_like RVT-GII HNHc CwlT_like RVT-GII Intron_maturas2 KOG4768 Neighborhood of RT #6 [1698553, 1708848] T4SS-DNA_transf T4SS-DNA_transf RVT-GII HNHc Neighborhood of RT #7 [1732075, 1736696] COG4584 PRK09183 RVT-GII Intron_maturas2 HNHc PRTRC_ThiF Neighborhood of RT #8 [1811170, 1819810] GT35_Glycogen_Phosphorylase glgA RVT-GII GIIM DDE_Tnp_1 glgD glgD Neighborhood of RT #9 [2059662, 2066595] AlsT AlsT RVT-GII GIIM DDE_Tnp_1 AlsT Neighborhood of RT #10 [3033605, 3037453] RVT-GII HNHc Neighborhood of RT #11 [3406191, 3410218] YopX RVT-GII HNHc COG5152 Neighborhood of RT #12 [3605628, 3610552] DDE_Tnp_1 RVT-GII GIIM Neighborhood of RT #13 [3693469, 3706587] ABC2_membrane_4 DDE_Tnp_1 RVT-GII GIIM PRK12467 SDR_e1 pCLME Neighborhood of RT #14 [3799661, 3810671] DUF4028 PRK12856 RVT-GII HNHc InsQ RVT-GII HNHc ETR_like Ntn_PVA Neighborhood of RT #15 [3822949, 3827693] MhpC Spore_YhaL RVT-GII Intron_maturas2 HNHc DUF2935 DUF2935 Neighborhood of RT #16 [3831504, 3837298] HTH_XRE DDE_Tnp_1 RVT-GII GIIM GlpP GlpF Neighborhood of RT #17 [3840976, 3844710] RVT-GII Peptidases_S8_Subtilisin_subset Neighborhood of RT #18 [3943595, 3947893] KOG4080 RVT-GII HNHc RecU Neighborhood of RT #19 [4360447, 4365176] DEDD_Tnp_IS110 COG3547 RVT-GII HNHc DUF1798 Neighborhood of RT #20 [4848665, 4870497] YdiL RVT-GII HNHc DUF2325 NlpD Spr RVT-GII Intron_maturas2 HNHc CwlT_like RVT-GII HNHc CwlT_like group_II_RT_mat HNHc RVT-GII CwlT_like TrbL Neighborhood of RT #21 [4922337, 4926640] E1_enzyme_family RVT-GII Intron_maturas2 HNHc PRTRC_ThiF Neighborhood of RT #22 [4984832, 4994399] DUF4158 DDE_Tnp_Tn3 DDE_Tnp_1 RVT-GII GIIM INT_ICEBs1_C_like Neighborhood of RT #23 [5031739, 5040025] Sigma70_r4_2 HTH_38 RVT-GII HNHc YopX RVT-GII HNHc RING-HC RING-HC Neighborhood of RT #24 [5245498, 5253895] Smc PhageMin_Tail PhageMin_Tail RVT-GII HNHc tape_meas_TP901 COG5283 Sipho_tail Neighborhood of RT #25 [5627514, 5635026] exospor_lead C1q RVT-GII HNHc phage_arpU Neighborhood of RT #26 [5644998, 5651667] EFh_HEF_SCGN RVT-GII HNHc HTH_23 Methyltransf_25 Neighborhood of RT #27 [5706193, 5712505] PenP Lysozyme_like RVT-GII Intron_maturas2 HNHc RimL Neighborhood of RT #28 [6759120, 6764543] PI-PLCc_BcPLC_like group_II_RT_mat RVT-GII DDE_Tnp_1 ABC2_membrane_4 Feature: gene Location: 177506-178114 bp Feature: domain Description: YpfH Location: 177518-178106 bp Feature: domain Description: YpfH Location: 177518-178106 bp Feature: gene Location: 178139-178375 bp Feature: domain Description: PcpA_C_like Location: 178145-178352 bp Feature: domain Description: PcpA_C_like Location: 178145-178352 bp Feature: gene Location: 178514-180310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178772-179477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178772 -179477 bp Feature: domain Description: HNHc Note: nucleases Location: 180038-180173 bp Feature: domain Description: HNHc Note: nucleases Location: 180038-180173 bp Feature: gene Location: 181079-181756 bp Feature: domain Description: PcpA_N_like Location: 181100-181466 bp Feature: domain Description: PcpA_N_like Location: 181100-181466 bp Feature: domain Description: PcpA_C_like Location: 181535-181742 bp Feature: domain Description: PcpA_C_like Location: 181535-181742 bp Feature: gene Location: 182097-183575 bp Feature: domain Description: Na_Pro_sym Location: 182109-183555 bp Feature: domain Description: Na_Pro_sym Location: 182 109-183555 bp Feature: gene Location: 314879-315649 bp Feature: gene Location: 316155-316889 bp Feature: domain Description: TatD_DNAse Location: 316173-316884 bp Feature: domain Description: TatD_DNAse Location: 316173-316884 bp Feature: gene Location: 317332-318639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 317617-318256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 317617-3182 56 bp Feature: domain Description: GIIM Note: maturase Location: 318331-318556 bp Feature: domain Description: GIIM Note: maturase Location: 318331-318556 bp Feature: gene Location: 319323-320201 bp Feature: domain Description: DDE_Tnp_1 Location: 319683-320073 bp Feature: domain Description: DDE_Tnp_1 Location: 319683-32 0073 bp Feature: gene Location: 320314-320532 bp Feature: gene Location: 893782-897180 bp Feature: domain Description: metH Location: 893806-897175 bp Feature: domain Description: metH Location: 893806-897175 bp Feature: gene Location: 897180-899012 bp Feature: domain Description: PRK08645 Location: 897186-899001 bp Feature: domain Description: PRK08645 Location: 897186-899001 bp Feature: gene Location: 899780-901087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 900065-900704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 900065-900704 bp Feature: domain Description: GIIM Note: maturase Location: 900779-901004 bp Feature: domain Description: GIIM Note: maturase Location: 900779-901004 bp Feature: gene Location: 901592-902650 bp Feature: domain Description: DDE_Tnp_1 Location: 901949-902636 bp Feature: domain Description: DDE_Tnp_1 Location: 901949-902 636 bp Feature: gene Location: 902883-902975 bp Feature: gene Location: 1229025-1229906 bp Feature: domain Description: spo_ytxC Location: 1229031-1229826 bp Feature: domain Description: spo_ytxC Location: 12 2 9031-12 2 982 6 bp Feature: gene Location: 1230142-1230339 bp Feature: domain Description: DUF4177 Location: 1230148-1230328 bp Feature: domain Description: DUF4177 Location: 12 30148-12 3032 8 bp Feature: gene Location: 1231033-1232340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1231318-1231957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 31318-12 31957 bp Feature: domain Description: GIIM Note: maturase Location: 1232032-1232257 bp Feature: domain Description: GIIM Note: maturase Location: 12 32 032 -12 32 2 57 bp Feature: gene Location: 1232844-1233902 bp Feature: domain Description: DDE_Tnp_1 Location: 1233201-1233888 bp Feature: domain Description: DDE_Tnp_1 Location: 12 332 01-12 33888 bp Feature: gene Location: 1234030-1234827 bp Feature: domain Description: PHA02517 Location: 1234048-1234816 bp Feature: domain Description: PHA02 517 Location: 12 34048-12 34816 bp Feature: gene Location: 1535044-1535895 bp Feature: domain Description: COG3503 Location: 1535179-1535308 bp Feature: domain Description: COG3503 Location: 1535179-1535308 bp Feature: gene Location: 1536285-1536551 bp Feature: domain Description: Lysozyme_like Location: 1536396-1536522 bp Feature: domain Description: Lysozyme_like Location: 1536396-153652 2 bp Feature: gene Location: 1537233-1539038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1537527-1538223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153752 7-15382 2 3 bp Feature: domain Description: HNHc Note: nucleases Location: 1538784-1538922 bp Feature: domain Description: HNHc Note: nucleases Location: 1538784-153892 2 bp Feature: gene Location: 1539214-1539450 bp Feature: domain Description: CwlT_like Location: 1539223-1539439 bp Feature: domain Description: CwlT_like Location: 15392 2 3-1539439 bp Feature: gene Location: 1540026-1541498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1540290-1541124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15402 90-154112 4 bp Feature: domain Description: Intron_maturas2 Location: 1541196-1541466 bp Feature: domain Description: Intron_maturas2 Location: 1541196-1541466 bp Feature: gene Location: 1541495-1541851 bp Feature: domain Description: KOG4768 Location: 1541603-1541843 bp Feature: domain Description: KOG4768 Location: 1541603-1541843 bp Feature: gene Location: 1541882-1542055 bp Feature: gene Location: 1698553-1701507 bp Feature: gene Location: 1701539-1703428 bp Feature: domain Description: T4SS-DNA_transf Location: 1701548-1702031 bp Feature: domain Description: T4SS-DNA_transf Location: 1701548-1702 031 bp Feature: domain Description: T4SS-DNA_transf Location: 1702421-1702937 bp Feature: domain Description: T4SS-DNA_transf Location: 1702 42 1-1702 937 bp Feature: gene Location: 1703629-1705458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1703929-1704631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170392 9-1704631 bp Feature: domain Description: HNHc Note: nucleases Location: 1705210-1705342 bp Feature: domain Description: HNHc Note: nucleases Location: 17052 10-1705342 bp Feature: gene Location: 1706177-1706857 bp Feature: gene Location: 1706875-1708848 bp Feature: gene Location: 1732075-1733370 bp Feature: domain Description: COG4584 Location: 1732489-1732879 bp Feature: domain Description: COG4584 Location: 1732 489-1732 879 bp Feature: gene Location: 1733360-1734112 bp Feature: domain Description: PRK09183 Location: 1733366-1734092 bp Feature: domain Description: PRK09183 Location: 1733366-1734092 bp Feature: gene Location: 1734213-1735499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1734219-1734726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17342 19-173472 6 bp Feature: domain Description: Intron_maturas2 Location: 1734858-1735107 bp Feature: domain Description: Intron_maturas2 Location: 1734858-1735107 bp Feature: domain Description: HNHc Note: nucleases Location: 1735293-1735446 bp Feature: domain Description: HNHc Note: nucleases Location: 17352 93-1735446 bp Feature: gene Location: 1735823-1736305 bp Feature: domain Description: PRTRC_ThiF Location: 1735838-1736276 bp Feature: domain Description: PRTRC_ThiF Location: 1735838-17362 76 bp Feature: gene Location: 1736325-1736696 bp Feature: gene Location: 1811170-1813578 bp Feature: domain Description: GT35_Glycogen_Phosphorylase Location: 1811200-1813555 bp Feature: domain Description: GT35_Glycogen_Phosphorylase Location: 18112 00-1813555 bp Feature: gene Location: 1813597-1814925 bp Feature: domain Description: glgA Location: 1813600-1814920 bp Feature: domain Description: glgA Location: 1813600-181492 0 bp Feature: gene Location: 1815623-1816930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1815908-1816547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1815908-1816547 bp Feature: domain Description: GIIM Note: maturase Location: 1816622-1816847 bp Feature: domain Description: GIIM Note: maturase Location: 181662 2 -1816847 bp Feature: gene Location: 1817435-1818493 bp Feature: domain Description: DDE_Tnp_1 Location: 1817792-1818479 bp Feature: domain Description: DDE_Tnp_1 Location: 1817792 -1818479 bp Feature: gene Location: 1818776-1819810 bp Feature: domain Description: glgD Location: 1818785-1819226 bp Feature: domain Description: glgD Location: 1818785-18192 2 6 bp Feature: domain Description: glgD Location: 1819232-1819781 bp Feature: domain Description: glgD Location: 18192 32 -1819781 bp Feature: gene Location: 2059662-2061095 bp Feature: domain Description: AlsT Location: 2059674-2061003 bp Feature: domain Description: AlsT Location: 2 059674-2 061003 bp Feature: gene Location: 2061432-2062400 bp Feature: domain Description: AlsT Location: 2061438-2062356 bp Feature: domain Description: AlsT Location: 2 061438-2 062 356 bp Feature: gene Location: 2063019-2064326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2063304-2063943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 063304-2 063943 bp Feature: domain Description: GIIM Note: maturase Location: 2064018-2064243 bp Feature: domain Description: GIIM Note: maturase Location: 2 064018-2 0642 43 bp Feature: gene Location: 2064831-2065889 bp Feature: domain Description: DDE_Tnp_1 Location: 2065188-2065875 bp Feature: domain Description: DDE_Tnp_1 Location: 2 065188-2 065875 bp Feature: gene Location: 2066128-2066595 bp Feature: domain Description: AlsT Location: 2066143-2066503 bp Feature: domain Description: AlsT Location: 2 066143-2 066503 bp Feature: gene Location: 3033605-3033862 bp Feature: gene Location: 3033893-3034198 bp Feature: gene Location: 3034917-3036716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3035214-3035907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30352 14-3035907 bp Feature: domain Description: HNHc Note: nucleases Location: 3036465-3036603 bp Feature: domain Description: HNHc Note: nucleases Location: 3036465-3036603 bp Feature: gene Location: 3036834-3037154 bp Feature: gene Location: 3037193-3037453 bp Feature: gene Location: 3406191-3406475 bp Feature: gene Location: 3406684-3407100 bp Feature: domain Description: YopX Location: 3406816-3407095 bp Feature: domain Description: YopX Location: 3406816-3407095 bp Feature: gene Location: 3407819-3409618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3408116-3408809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3408116-3408809 bp Feature: domain Description: HNHc Note: nucleases Location: 3409367-3409505 bp Feature: domain Description: HNHc Note: nucleases Location: 3409367-3409505 bp Feature: gene Location: 3409867-3410004 bp Feature: domain Description: COG5152 Location: 3409879-3409975 bp Feature: domain Description: COG5152 Location: 3409879-3409975 bp Feature: gene Location: 3410042-3410218 bp Feature: gene Location: 3605628-3605720 bp Feature: gene Location: 3605953-3607011 bp Feature: domain Description: DDE_Tnp_1 Location: 3606310-3606997 bp Feature: domain Description: DDE_Tnp_1 Location: 3606310-3606997 bp Feature: gene Location: 3607516-3608823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3607801-3608440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3607801-3608440 bp Feature: domain Description: GIIM Note: maturase Location: 3608515-3608740 bp Feature: domain Description: GIIM Note: maturase Location: 3608515-3608740 bp Feature: gene Location: 3610125-3610310 bp Feature: gene Location: 3610316-3610552 bp Feature: gene Location: 3693469-3694209 bp Feature: domain Description: ABC2_membrane_4 Location: 3693472-3694000 bp Feature: domain Description: ABC2 _membrane_4 Location: 3693472 -3694000 bp Feature: gene Location: 3694555-3695613 bp Feature: domain Description: DDE_Tnp_1 Location: 3694912-3695599 bp Feature: domain Description: DDE_Tnp_1 Location: 3694912 -3695599 bp Feature: gene Location: 3696118-3697425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3696403-3697042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3696403-3697042 bp Feature: domain Description: GIIM Note: maturase Location: 3697117-3697342 bp Feature: domain Description: GIIM Note: maturase Location: 3697117-3697342 bp Feature: gene Location: 3698217-3704387 bp Feature: domain Description: PRK12467 Location: 3698241-3703128 bp Feature: domain Description: PRK12 467 Location: 36982 41-370312 8 bp Feature: domain Description: SDR_e1 Location: 3703224-3704115 bp Feature: domain Description: SDR_e1 Location: 37032 2 4-3704115 bp Feature: gene Location: 3705232-3706587 bp Feature: domain Description: pCLME Location: 3705262-3706567 bp Feature: domain Description: pCLME Location: 37052 62 -3706567 bp Feature: gene Location: 3799661-3799876 bp Feature: domain Description: DUF4028 Location: 3799664-3799856 bp Feature: domain Description: DUF402 8 Location: 3799664-3799856 bp Feature: gene Location: 3800007-3800318 bp Feature: domain Description: PRK12856 Location: 3800010-3800316 bp Feature: domain Description: PRK12 856 Location: 3800010-3800316 bp Feature: gene Location: 3801272-3803071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3801569-3802262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3801569-3802 2 62 bp Feature: domain Description: HNHc Note: nucleases Location: 3802820-3802958 bp Feature: domain Description: HNHc Note: nucleases Location: 3802 82 0-3802 958 bp Feature: gene Location: 3803135-3803323 bp Feature: gene Location: 3803598-3803903 bp Feature: gene Location: 3804188-3805318 bp Feature: domain Description: InsQ Location: 3804191-3805307 bp Feature: domain Description: InsQ Location: 3804191-3805307 bp Feature: gene Location: 3806072-3807877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3806366-3807062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3806366-3807062 bp Feature: domain Description: HNHc Note: nucleases Location: 3807623-3807761 bp Feature: domain Description: HNHc Note: nucleases Location: 380762 3-3807761 bp Feature: gene Location: 3808551-3809534 bp Feature: domain Description: ETR_like Location: 3808572-3809508 bp Feature: domain Description: ETR_like Location: 3808572 -3809508 bp Feature: gene Location: 3809685-3810671 bp Feature: domain Description: Ntn_PVA Location: 3809691-3810591 bp Feature: domain Description: Ntn_PVA Location: 3809691-3810591 bp Feature: gene Location: 3822949-3823821 bp Feature: domain Description: MhpC Location: 3823093-3823807 bp Feature: domain Description: MhpC Location: 382 3093-382 3807 bp Feature: gene Location: 3823900-3824100 bp Feature: domain Description: Spore_YhaL Location: 3823912-3824065 bp Feature: domain Description: Spore_YhaL Location: 382 3912 -382 4065 bp Feature: gene Location: 3824886-3826709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3825150-3825984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382 5150-382 5984 bp Feature: domain Description: Intron_maturas2 Location: 3826053-3826392 bp Feature: domain Description: Intron_maturas2 Location: 382 6053-382 6392 bp Feature: domain Description: HNHc Note: nucleases Location: 3826530-3826686 bp Feature: domain Description: HNHc Note: nucleases Location: 382 6530-382 6686 bp Feature: gene Location: 3826712-3826849 bp Feature: gene Location: 3826842-3827693 bp Feature: domain Description: DUF2935 Location: 3826908-3827250 bp Feature: domain Description: DUF2 935 Location: 382 6908-382 72 50 bp Feature: domain Description: DUF2935 Location: 3827295-3827643 bp Feature: domain Description: DUF2 935 Location: 382 72 95-382 7643 bp Feature: gene Location: 3831504-3831839 bp Feature: domain Description: HTH_XRE Location: 3831519-3831687 bp Feature: domain Description: HTH_XRE Location: 3831519-3831687 bp Feature: gene Location: 3831889-3832947 bp Feature: domain Description: DDE_Tnp_1 Location: 3832246-3832933 bp Feature: domain Description: DDE_Tnp_1 Location: 3832 2 46-3832 933 bp Feature: gene Location: 3833452-3834759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3833737-3834376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3833737-3834376 bp Feature: domain Description: GIIM Note: maturase Location: 3834451-3834676 bp Feature: domain Description: GIIM Note: maturase Location: 3834451-3834676 bp Feature: gene Location: 3835688-3836248 bp Feature: domain Description: GlpP Location: 3835697-3836234 bp Feature: domain Description: GlpP Location: 3835697-38362 34 bp Feature: gene Location: 3836477-3837298 bp Feature: domain Description: GlpF Location: 3836480-3837179 bp Feature: domain Description: GlpF Location: 3836480-3837179 bp Feature: gene Location: 3840976-3841254 bp Feature: gene Location: 3841276-3841428 bp Feature: gene Location: 3841773-3842390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3841797-3842211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3841797-3842 2 11 bp Feature: gene Location: 3842938-3843909 bp Feature: domain Description: Peptidases_S8_Subtilisin_subset Location: 3843157-3843805 bp Feature: domain Description: Peptidases_S8_Subtilisin_subset Location: 3843157-3843805 bp Feature: gene Location: 3843925-3844710 bp Feature: gene Location: 3943595-3943903 bp Feature: domain Description: KOG4080 Location: 3943607-3943673 bp Feature: domain Description: KOG4080 Location: 3943607-3943673 bp Feature: gene Location: 3943938-3944411 bp Feature: gene Location: 3945129-3946928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3945426-3946119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394542 6-3946119 bp Feature: domain Description: HNHc Note: nucleases Location: 3946677-3946815 bp Feature: domain Description: HNHc Note: nucleases Location: 3946677-3946815 bp Feature: gene Location: 3947046-3947573 bp Feature: domain Description: RecU Location: 3947070-3947550 bp Feature: domain Description: RecU Location: 3947070-3947550 bp Feature: gene Location: 3947570-3947893 bp Feature: gene Location: 4360447-4361676 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 4360462-4360945 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 4360462 -4360945 bp Feature: domain Description: COG3547 Location: 4361173-4361554 bp Feature: domain Description: COG3547 Location: 4361173-4361554 bp Feature: gene Location: 4361969-4362211 bp Feature: gene Location: 4362960-4363943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4363254-4363926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43632 54-436392 6 bp Feature: gene Location: 4364081-4364764 bp Feature: domain Description: HNHc Note: nucleases Location: 4364495-4364648 bp Feature: domain Description: HNHc Note: nucleases Location: 4364495-4364648 bp Feature: gene Location: 4364871-4365176 bp Feature: domain Description: DUF1798 Location: 4364886-4365168 bp Feature: domain Description: DUF1798 Location: 4364886-4365168 bp Feature: gene Location: 4848665-4849348 bp Feature: domain Description: YdiL Location: 4848683-4849334 bp Feature: domain Description: YdiL Location: 4848683-4849334 bp Feature: gene Location: 4851058-4851345 bp Feature: gene Location: 4851908-4853707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4852205-4852898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4852 2 05-4852 898 bp Feature: domain Description: HNHc Note: nucleases Location: 4853456-4853594 bp Feature: domain Description: HNHc Note: nucleases Location: 4853456-4853594 bp Feature: gene Location: 4854767-4854964 bp Feature: gene Location: 4855039-4855338 bp Feature: domain Description: DUF2325 Location: 4855051-4855321 bp Feature: domain Description: DUF2 32 5 Location: 4855051-485532 1 bp Feature: gene Location: 4856471-4857346 bp Feature: domain Description: NlpD Location: 4856486-4856915 bp Feature: domain Description: NlpD Location: 4856486-4856915 bp Feature: domain Description: Spr Location: 4856951-4857287 bp Feature: domain Description: Spr Location: 4856951-48572 87 bp Feature: gene Location: 4857370-4857504 bp Feature: gene Location: 4857507-4859330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4857771-4858605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4857771-4858605 bp Feature: domain Description: Intron_maturas2 Location: 4858674-4859013 bp Feature: domain Description: Intron_maturas2 Location: 4858674-4859013 bp Feature: domain Description: HNHc Note: nucleases Location: 4859151-4859307 bp Feature: domain Description: HNHc Note: nucleases Location: 4859151-4859307 bp Feature: gene Location: 4859906-4860097 bp Feature: domain Description: CwlT_like Location: 4859933-4860086 bp Feature: domain Description: CwlT_like Location: 4859933-4860086 bp Feature: gene Location: 4860166-4861962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4860424-4861129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 486042 4-486112 9 bp Feature: domain Description: HNHc Note: nucleases Location: 4861690-4861825 bp Feature: domain Description: HNHc Note: nucleases Location: 4861690-486182 5 bp Feature: gene Location: 4862735-4862902 bp Feature: domain Description: CwlT_like Location: 4862777-4862885 bp Feature: domain Description: CwlT_like Location: 4862 777-4862 885 bp Feature: gene Location: 4863018-4863902 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4863021-4863306 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 486302 1-4863306 bp Feature: domain Description: HNHc Note: nucleases Location: 4863648-4863786 bp Feature: domain Description: HNHc Note: nucleases Location: 4863648-4863786 bp Feature: gene Location: 4863862-4864824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4864156-4864747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4864156-4864747 bp Feature: gene Location: 4865498-4866496 bp Feature: domain Description: CwlT_like Location: 4866350-4866473 bp Feature: domain Description: CwlT_like Location: 4866350-4866473 bp Feature: gene Location: 4866493-4870497 bp Feature: domain Description: TrbL Location: 4866982-4867255 bp Feature: domain Description: TrbL Location: 4866982 -48672 55 bp Feature: gene Location: 4922337-4922738 bp Feature: gene Location: 4922752-4922934 bp Feature: domain Description: E1_enzyme_family Location: 4922800-4922917 bp Feature: domain Description: E1_enzyme_family Location: 492 2 800-492 2 917 bp Feature: gene Location: 4923503-4925443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4923833-4924670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492 3833-492 4670 bp Feature: domain Description: Intron_maturas2 Location: 4924802-4925051 bp Feature: domain Description: Intron_maturas2 Location: 492 4802 -492 5051 bp Feature: domain Description: HNHc Note: nucleases Location: 4925237-4925390 bp Feature: domain Description: HNHc Note: nucleases Location: 492 52 37-492 5390 bp Feature: gene Location: 4925767-4926249 bp Feature: domain Description: PRTRC_ThiF Location: 4925782-4926220 bp Feature: domain Description: PRTRC_ThiF Location: 492 5782 -492 62 2 0 bp Feature: gene Location: 4926269-4926640 bp Feature: gene Location: 4984832-4987678 bp Feature: domain Description: DUF4158 Location: 4984835-4985321 bp Feature: domain Description: DUF4158 Location: 4984835-498532 1 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 4986566-4987172 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 4986566-4987172 bp Feature: gene Location: 4987843-4988901 bp Feature: domain Description: DDE_Tnp_1 Location: 4988200-4988887 bp Feature: domain Description: DDE_Tnp_1 Location: 49882 00-4988887 bp Feature: gene Location: 4989406-4990713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4989691-4990330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4989691-4990330 bp Feature: domain Description: GIIM Note: maturase Location: 4990405-4990630 bp Feature: domain Description: GIIM Note: maturase Location: 4990405-4990630 bp Feature: gene Location: 4992132-4992701 bp Feature: gene Location: 4992747-4994399 bp Feature: domain Description: INT_ICEBs1_C_like Location: 4993374-4993878 bp Feature: domain Description: INT_ICEBs1_C_like Location: 4993374-4993878 bp Feature: gene Location: 5031739-5032515 bp Feature: domain Description: Sigma70_r4_2 Location: 5031898-5031976 bp Feature: domain Description: Sigma70_r4_2 Location: 5031898-5031976 bp Feature: domain Description: HTH_38 Location: 5032354-5032438 bp Feature: domain Description: HTH_38 Location: 5032 354-5032 438 bp Feature: gene Location: 5032729-5032983 bp Feature: gene Location: 5033906-5035705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5034203-5034896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50342 03-5034896 bp Feature: domain Description: HNHc Note: nucleases Location: 5035454-5035592 bp Feature: domain Description: HNHc Note: nucleases Location: 5035454-5035592 bp Feature: gene Location: 5035976-5036377 bp Feature: domain Description: YopX Location: 5036018-5036369 bp Feature: domain Description: YopX Location: 5036018-5036369 bp Feature: gene Location: 5037096-5038895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5037393-5038086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5037393-5038086 bp Feature: domain Description: HNHc Note: nucleases Location: 5038644-5038782 bp Feature: domain Description: HNHc Note: nucleases Location: 5038644-5038782 bp Feature: gene Location: 5039145-5039747 bp Feature: gene Location: 5039780-5040025 bp Feature: domain Description: RING-HC Location: 5039792-5039864 bp Feature: domain Description: RING-HC Location: 5039792 -5039864 bp Feature: domain Description: RING-HC Location: 5039921-5040011 bp Feature: domain Description: RING-HC Location: 503992 1-5040011 bp Feature: gene Location: 5245498-5246814 bp Feature: domain Description: Smc Location: 5245552-5246233 bp Feature: domain Description: Smc Location: 52 45552 -52 462 33 bp Feature: domain Description: PhageMin_Tail Location: 5246398-5246806 bp Feature: domain Description: PhageMin_Tail Location: 52 46398-52 46806 bp Feature: gene Location: 5246995-5247261 bp Feature: domain Description: PhageMin_Tail Location: 5247043-5247163 bp Feature: domain Description: PhageMin_Tail Location: 52 47043-52 47163 bp Feature: gene Location: 5247935-5249740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5248229-5248925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 482 2 9-52 4892 5 bp Feature: domain Description: HNHc Note: nucleases Location: 5249486-5249624 bp Feature: domain Description: HNHc Note: nucleases Location: 52 49486-52 4962 4 bp Feature: gene Location: 5249850-5252399 bp Feature: domain Description: tape_meas_TP901 Location: 5249940-5250375 bp Feature: domain Description: tape_meas_TP901 Location: 52 49940-52 50375 bp Feature: domain Description: COG5283 Location: 5250795-5251443 bp Feature: domain Description: COG52 83 Location: 52 50795-52 51443 bp Feature: gene Location: 5252414-5253895 bp Feature: domain Description: Sipho_tail Location: 5252480-5253893 bp Feature: domain Description: Sipho_tail Location: 52 52 480-52 53893 bp Feature: gene Location: 5627514-5627978 bp Feature: gene Location: 5628442-5629023 bp Feature: domain Description: exospor_lead Location: 5628496-5628550 bp Feature: domain Description: exospor_lead Location: 562 8496-562 8550 bp Feature: domain Description: C1q Location: 5628655-5629018 bp Feature: domain Description: C1q Location: 562 8655-562 9018 bp Feature: gene Location: 5630913-5632712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5631210-5631903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56312 10-5631903 bp Feature: domain Description: HNHc Note: nucleases Location: 5632461-5632599 bp Feature: domain Description: HNHc Note: nucleases Location: 5632 461-5632 599 bp Feature: gene Location: 5632858-5633169 bp Feature: gene Location: 5634544-5635026 bp Feature: domain Description: phage_arpU Location: 5634565-5634988 bp Feature: domain Description: phage_arpU Location: 5634565-5634988 bp Feature: gene Location: 5644998-5645882 bp Feature: gene Location: 5646399-5646872 bp Feature: domain Description: EFh_HEF_SCGN Location: 5646468-5646723 bp Feature: domain Description: EFh_HEF_SCGN Location: 5646468-564672 3 bp Feature: gene Location: 5647679-5649478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5647976-5648669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5647976-5648669 bp Feature: domain Description: HNHc Note: nucleases Location: 5649227-5649365 bp Feature: domain Description: HNHc Note: nucleases Location: 56492 2 7-5649365 bp Feature: gene Location: 5650149-5650454 bp Feature: domain Description: HTH_23 Location: 5650176-5650299 bp Feature: domain Description: HTH_2 3 Location: 5650176-56502 99 bp Feature: gene Location: 5650957-5651667 bp Feature: domain Description: Methyltransf_25 Location: 5651146-5651425 bp Feature: domain Description: Methyltransf_2 5 Location: 5651146-565142 5 bp Feature: gene Location: 5706193-5707137 bp Feature: domain Description: PenP Location: 5706334-5707114 bp Feature: domain Description: PenP Location: 5706334-5707114 bp Feature: gene Location: 5708517-5709098 bp Feature: domain Description: Lysozyme_like Location: 5708652-5709087 bp Feature: domain Description: Lysozyme_like Location: 5708652 -5709087 bp Feature: gene Location: 5709674-5711497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5709938-5710772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5709938-5710772 bp Feature: domain Description: Intron_maturas2 Location: 5710841-5711180 bp Feature: domain Description: Intron_maturas2 Location: 5710841-5711180 bp Feature: domain Description: HNHc Note: nucleases Location: 5711318-5711474 bp Feature: domain Description: HNHc Note: nucleases Location: 5711318-5711474 bp Feature: gene Location: 5711499-5711630 bp Feature: gene Location: 5711999-5712505 bp Feature: domain Description: RimL Location: 5712008-5712503 bp Feature: domain Description: RimL Location: 5712 008-5712 503 bp Feature: gene Location: 6759120-6759956 bp Feature: domain Description: PI-PLCc_BcPLC_like Location: 6759273-6759927 bp Feature: domain Description: PI-PLCc_BcPLC_like Location: 67592 73-675992 7 bp Feature: gene Location: 6760588-6761019 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6760606-6760897 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6760606-6760897 bp Feature: gene Location: 6761222-6761896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6761507-6761864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6761507-6761864 bp Feature: gene Location: 6762399-6763457 bp Feature: domain Description: DDE_Tnp_1 Location: 6762756-6763443 bp Feature: domain Description: DDE_Tnp_1 Location: 6762 756-6763443 bp Feature: gene Location: 6763785-6764543 bp Feature: domain Description: ABC2_membrane_4 Location: 6763788-6764316 bp Feature: domain Description: ABC2 _membrane_4 Location: 6763788-6764316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YpfH (COG0400), PcpA_C_like (cd08347), RVT-GII, HNHc (smart00507), PcpA_N_like (cd08346), Na_Pro_sym (TIGR02121), TatD_DNAse (cd01310), GIIM (pfam08388), DDE_Tnp_1 (pfam01609), metH (TIGR02082)
PRK08645 (bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed), spo_ytxC (TIGR02834), DUF4177 (pfam13783), PHA02517 (putative transposase OrfB; Reviewed), COG3503 (Uncharacterized membrane protein ), Lysozyme_like (pfam13702), CwlT_like, Intron_maturas2 (pfam01348), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), T4SS-DNA_transf (pfam02534)
COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), PRTRC_ThiF (TIGR03736), GT35_Glycogen_Phosphorylase (cd04300), glgA (TIGR02095), glgD (TIGR02092), AlsT (COG1115), YopX (pfam09643), COG5152 (Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers ), ABC2_membrane_4 (pfam12730)
PRK12467 (peptide synthase; Provisional), SDR_e1 (cd05235), pCLME (cd01597), DUF4028 (pfam13220), PRK12856 (hypothetical protein; Provisional), InsQ (COG0675), ETR_like (cd05282), Ntn_PVA (cd00542), MhpC (COG0596), Spore_YhaL (pfam14147)
DUF2935 (pfam11155), HTH_XRE (smart00530), GlpP (COG1954), GlpF (COG0580), Peptidases_S8_Subtilisin_subset (cd07477), KOG4080 (KOG4080, Mitochondrial ribosomal protein L32 ), RecU (pfam03838), DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase ), DUF1798 (pfam08807)
YdiL (COG1266), DUF2325 (pfam10087), NlpD (COG0739), Spr (COG0791), group_II_RT_mat (TIGR04416), TrbL (pfam04610), E1_enzyme_family (cl22428), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), INT_ICEBs1_C_like (cd01189)
Sigma70_r4_2 (pfam08281), HTH_38 (pfam13936), RING-HC (cd16449), Smc (COG1196), PhageMin_Tail (pfam10145), tape_meas_TP901 (TIGR01760), COG5283 (Phage-related tail protein ), Sipho_tail (pfam05709), exospor_lead (TIGR03720), C1q (pfam00386)
phage_arpU (TIGR01637), EFh_HEF_SCGN (cd16178), HTH_23 (pfam13384), Methyltransf_25 (pfam13649), PenP (COG2367), RimL (COG1670), PI-PLCc_BcPLC_like (cd08586)

Seq: JTHH01000005.1 Bacillus thuringiensis serovar morrisoni strain HD 600 BG10.Contig204, whole genome shotgun sequence (23747 bp)
Overview 1 RT 1: 1337-4609 bp 2 RT 2: 13647-16407 bp Neighborhood of RT #1 [1337, 5145] RVT-GII GIIM SXT_TraD Neighborhood of RT #2 [13647, 16407] SXT_TraD RVT-GII GIIM Feature: gene Location: 1337-1516 bp Feature: gene Location: 1513-1656 bp Feature: gene Location: 1690-2997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1975-2614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1975-2614 bp Feature: domain Description: GIIM Note: maturase Location: 2689-2914 bp Feature: domain Description: GIIM Note: maturase Location: 2689-2914 bp Feature: gene Location: 3222-3533 bp Feature: gene Location: 3616-5145 bp Feature: domain Description: SXT_TraD Location: 4195-4609 bp Feature: domain Description: SXT_TraD Location: 4195-4609 bp Feature: gene Location: 13647-14084 bp Feature: domain Description: SXT_TraD Location: 13653-13887 bp Feature: domain Description: SXT_TraD Location: 13 653 -13 887 bp Feature: gene Location: 14211-14522 bp Feature: gene Location: 14747-16054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15032-15671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1503 2-15671 bp Feature: domain Description: GIIM Note: maturase Location: 15746-15971 bp Feature: domain Description: GIIM Note: maturase Location: 15746-15971 bp Feature: gene Location: 16088-16231 bp Feature: gene Location: 16228-16407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), SXT_TraD (TIGR03743)