myRT

myRT report for GCA_000833975.1_ASM83397v1

Download annotations/find similar RTs

Seq: JXQK01000059.1 Prevotella sp. P5-119 contig59, whole genome shotgun sequence (12221 bp)
Overview 1 RT 1: 5405-11964 bp Neighborhood of RT #1 [5405, 12092] RVT-UG26 DZR SLR SLR SEL1 SLR SLR SLR Feature: gene Location: 5405-5728 bp Feature: gene Location: 5744-6232 bp Feature: gene Location: 6278-7441 bp Ori: KIP62035.1 Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 6416-7037 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 641 6-7037 bp Feature: gene Location: 7681-10425 bp Ori: KIP62036.1 Feature: domain Description: DZR Location: 7696-7834 bp Feature: domain Description: DZR Location: 7696-7834 bp Feature: domain Description: SLR Location: 7987-8215 bp Feature: domain Description: SLR Location: 7987-821 5 bp Feature: domain Description: SLR Location: 8239-8566 bp Feature: domain Description: SLR Location: 8239-8566 bp Feature: domain Description: SEL1 Location: 8575-8677 bp Feature: domain Description: SEL1 Location: 8575-8677 bp Feature: domain Description: SLR Location: 8728-8989 bp Feature: domain Description: SLR Location: 8728-8989 bp Feature: domain Description: SLR Location: 9079-9382 bp Feature: domain Description: SLR Location: 9079-9382 bp Feature: gene Location: 10449-12092 bp Ori: KIP62037.1 Feature: domain Description: SLR Location: 11772-11964 bp Feature: domain Description: SLR Location: 1 1 772-1 1 964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26, DZR (pfam12773), SLR (sd00010), SEL1 (smart00671)

Seq: JXQK01000031.1 Prevotella sp. P5-119 contig31, whole genome shotgun sequence (115829 bp)
Overview 1 RT 1: 102720-106708 bp Neighborhood of RT #1 [102720, 106896] DUF1016_N YhcG_C MotB RVT-GII GIIM Feature: gene Location: 102720-103841 bp Ori: KIP64198.1 Feature: domain Description: DUF1016_N Location: 102759-103275 bp Feature: domain Description: DUF1016_N Location: 102 759-1032 75 bp Feature: domain Description: YhcG_C Location: 103350-103803 bp Feature: domain Description: YhcG_C Location: 103350-103803 bp Feature: gene Location: 104144-104995 bp Ori: KIP64185.1 Feature: domain Description: MotB Location: 104261-104948 bp Feature: domain Description: MotB Location: 1042 61-104948 bp Feature: gene Location: 105490-106896 bp Ori: KIP64186.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105832-106450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105832 -106450 bp Feature: domain Description: GIIM Note: maturase Location: 106504-106708 bp Feature: domain Description: GIIM Note: maturase Location: 106504-106708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1016_N (pfam17761), YhcG_C, MotB (COG1360), RVT-GII, GIIM (pfam08388)

Seq: JXQK01000093.1 Prevotella sp. P5-119 contig93, whole genome shotgun sequence (16949 bp)
Overview 1 RT 1: 5222-11184 bp Neighborhood of RT #1 [5222, 11324] DUF4134 DUF4134 RVT-GII Intron_maturas2 HNHc Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 5222-5575 bp Ori: KIP59621.1 Feature: domain Description: DUF4134 Location: 5267-5558 bp Feature: domain Description: DUF413 4 Location: 5267-5558 bp Feature: gene Location: 5678-5953 bp Ori: KIP59610.1 Feature: domain Description: DUF4134 Location: 5735-5936 bp Feature: domain Description: DUF413 4 Location: 573 5-593 6 bp Feature: gene Location: 6495-8306 bp Ori: KIP59611.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6759-7581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6759-7581 bp Feature: domain Description: Intron_maturas2 Location: 7770-7980 bp Feature: domain Description: Intron_maturas2 Location: 7770-7980 bp Feature: domain Description: HNHc Note: nucleases Location: 8130-8235 bp Feature: domain Description: HNHc Note: nucleases Location: 813 0-823 5 bp Feature: gene Location: 8765-9937 bp Ori: KIP59612.1 Feature: domain Description: Arm-DNA-bind_5 Location: 8807-8990 bp Feature: domain Description: Arm-DNA-bind_5 Location: 8807-8990 bp Feature: domain Description: Phage_int_SAM_5 Location: 9050-9365 bp Feature: domain Description: Phage_int_SAM_5 Location: 9050-93 65 bp Feature: domain Description: INTN1_C_like Location: 9428-9899 bp Feature: domain Description: INTN1_C_like Location: 9428-9899 bp Feature: gene Location: 10062-11324 bp Ori: KIP59613.1 Feature: domain Description: Arm-DNA-bind_5 Location: 10071-10254 bp Feature: domain Description: Arm-DNA-bind_5 Location: 10071-10254 bp Feature: domain Description: Phage_int_SAM_5 Location: 10329-10656 bp Feature: domain Description: Phage_int_SAM_5 Location: 103 29-10656 bp Feature: domain Description: INTN1_C_like Location: 10722-11184 bp Feature: domain Description: INTN1_C_like Location: 10722-11184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: JXQK01000043.1 Prevotella sp. P5-119 contig43, whole genome shotgun sequence (120550 bp)
Overview 1 RT 1: 18640-25126 bp Neighborhood of RT #1 [18640, 25230] WYL WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep RVT-Retrons COG1373 Feature: gene Location: 18640-19722 bp Ori: KIP63361.1 Feature: domain Description: WYL Location: 19126-19687 bp Feature: domain Description: WYL Location: 19126-19687 bp Feature: gene Location: 19774-20616 bp Ori: KIP63362.1 Feature: domain Description: WG_beta_rep Location: 19894-20002 bp Feature: domain Description: WG_beta_rep Location: 19894 -20002 bp Feature: domain Description: WG_beta_rep Location: 20056-20149 bp Feature: domain Description: WG_beta_rep Location: 20056-2014 9 bp Feature: domain Description: WG_beta_rep Location: 20173-20266 bp Feature: domain Description: WG_beta_rep Location: 20173-20266 bp Feature: domain Description: WG_beta_rep Location: 20302-20392 bp Feature: domain Description: WG_beta_rep Location: 20302-20392 bp Feature: gene Location: 20955-22406 bp Ori: KIP63363.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21153-21753 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21153-21753 bp Feature: gene Location: 22412-23332 bp Feature: gene Location: 23776-25230 bp Ori: KIP63365.1 Feature: domain Description: COG1373 Location: 23920-25126 bp Feature: domain Description: COG1373 Location: 23920-25126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WYL (pfam13280), WG_beta_rep (pfam14903), RVT-Retrons, COG1373 (Predicted ATPase, AAA+ superfamily )

Seq: JXQK01000009.1 Prevotella sp. P5-119 contig9, whole genome shotgun sequence (1924 bp)
Overview 1 RT 1: 425-1643 bp Neighborhood of RT #1 [425, 1831] RVT-GII GIIM Feature: gene Location: 425-1831 bp Ori: KIP64871.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 767-1385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 767-1385 bp Feature: domain Description: GIIM Note: maturase Location: 1439-1643 bp Feature: domain Description: GIIM Note: maturase Location: 1439-1643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)