myRT

myRT report for GCA_000834015.1_ASM83401v1

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Seq: JXQI01000034.1 Prevotella sp. P4-76 contig34, whole genome shotgun sequence (14063 bp)
Overview 1 RT 1: 9119-13376 bp Neighborhood of RT #1 [9119, 13564] Methyltransf_11 ADOP RVT-GII GIIM Feature: gene Location: 9119-9895 bp Ori: KIP57271.1 Feature: domain Description: Methyltransf_11 Location: 9257-9542 bp Feature: domain Description: Methyltransf_1 1 Location: 9257-9542 bp Feature: gene Location: 10213-12066 bp Ori: KIP57268.1 Feature: domain Description: ADOP Location: 10276-12064 bp Feature: domain Description: ADOP Location: 1 0276-1 2064 bp Feature: gene Location: 12158-13564 bp Ori: KIP57269.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12500-13118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2500-1 31 1 8 bp Feature: domain Description: GIIM Note: maturase Location: 13172-13376 bp Feature: domain Description: GIIM Note: maturase Location: 1 31 72-1 3376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_11 (pfam08241), ADOP (TIGR03434), RVT-GII, GIIM (pfam08388)

Seq: JXQI01000018.1 Prevotella sp. P4-76 contig18, whole genome shotgun sequence (50680 bp)
Overview 1 RT 1: 38800-45487 bp Neighborhood of RT #1 [38800, 45487] SLR DZR SLR SLR SEL1 SLR SLR RVT-UG26 Feature: gene Location: 38800-40443 bp Ori: KIP58301.1 Feature: domain Description: SLR Location: 40123-40315 bp Feature: domain Description: SLR Location: 4012 3-40315 bp Feature: gene Location: 40467-43211 bp Ori: KIP58302.1 Feature: domain Description: DZR Location: 40482-40620 bp Feature: domain Description: DZR Location: 40482 -4062 0 bp Feature: domain Description: SLR Location: 40773-41001 bp Feature: domain Description: SLR Location: 40773-41001 bp Feature: domain Description: SLR Location: 41025-41352 bp Feature: domain Description: SLR Location: 4102 5-41352 bp Feature: domain Description: SEL1 Location: 41361-41463 bp Feature: domain Description: SEL1 Location: 41361-41463 bp Feature: domain Description: SLR Location: 41514-41775 bp Feature: domain Description: SLR Location: 41514-41775 bp Feature: domain Description: SLR Location: 41865-42168 bp Feature: domain Description: SLR Location: 41865-42 168 bp Feature: gene Location: 43391-44614 bp Ori: KIP58303.1 Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 43589-44210 bp Feature: RT Description: RVT-UG2 6 Note: UG2 6 RT Location: 43589-442 10 bp Feature: gene Location: 44660-45148 bp Feature: gene Location: 45164-45487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLR (sd00010), DZR (pfam12773), SEL1 (smart00671), RVT-UG26

Seq: JXQI01000021.1 Prevotella sp. P4-76 contig21, whole genome shotgun sequence (188462 bp)
Overview 1 RT 1: 167087-173574 bp Neighborhood of RT #1 [167087, 173678] WYL WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep RVT-Retrons COG1373 Feature: gene Location: 167087-168169 bp Ori: KIP58077.1 Feature: domain Description: WYL Location: 167573-168134 bp Feature: domain Description: WYL Location: 167573 -16813 4 bp Feature: gene Location: 168221-169063 bp Ori: KIP58078.1 Feature: domain Description: WG_beta_rep Location: 168341-168449 bp Feature: domain Description: WG_beta_rep Location: 1683 41-168449 bp Feature: domain Description: WG_beta_rep Location: 168503-168596 bp Feature: domain Description: WG_beta_rep Location: 168503 -168596 bp Feature: domain Description: WG_beta_rep Location: 168620-168713 bp Feature: domain Description: WG_beta_rep Location: 168620-168713 bp Feature: domain Description: WG_beta_rep Location: 168749-168839 bp Feature: domain Description: WG_beta_rep Location: 168749-16883 9 bp Feature: gene Location: 169403-170854 bp Ori: KIP58079.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 169601-170201 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 169601-170201 bp Feature: gene Location: 170860-171780 bp Feature: gene Location: 172224-173678 bp Ori: KIP58081.1 Feature: domain Description: COG1373 Location: 172368-173574 bp Feature: domain Description: COG13 73 Location: 1723 68-173 574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WYL (pfam13280), WG_beta_rep (pfam14903), RVT-Retrons, COG1373 (Predicted ATPase, AAA+ superfamily )

Seq: JXQI01000029.1 Prevotella sp. P4-76 contig29, whole genome shotgun sequence (33678 bp)
Overview 1 RT 1: 20372-25049 bp Neighborhood of RT #1 [20372, 25087] DUF4134 DUF4134 RVT-GII Intron_maturas2 HNHc Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 20372-20725 bp Ori: KIP57477.1 Feature: domain Description: DUF4134 Location: 20417-20708 bp Feature: domain Description: DUF4 134 Location: 204 17-20708 bp Feature: gene Location: 20828-21103 bp Ori: KIP57462.1 Feature: domain Description: DUF4134 Location: 20885-21086 bp Feature: domain Description: DUF4 134 Location: 20885-21086 bp Feature: gene Location: 21645-23456 bp Ori: KIP57463.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21909-22731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21909-22731 bp Feature: domain Description: Intron_maturas2 Location: 22920-23130 bp Feature: domain Description: Intron_maturas2 Location: 22920-23130 bp Feature: domain Description: HNHc Note: nucleases Location: 23280-23385 bp Feature: domain Description: HNHc Note: nucleases Location: 23280-23385 bp Feature: gene Location: 23595-23912 bp Feature: gene Location: 23915-25087 bp Ori: KIP57465.1 Feature: domain Description: Arm-DNA-bind_5 Location: 23957-24140 bp Feature: domain Description: Arm-DNA-bind_5 Location: 23957-24 14 0 bp Feature: domain Description: Phage_int_SAM_5 Location: 24200-24515 bp Feature: domain Description: Phage_int_SAM_5 Location: 24 200-24 515 bp Feature: domain Description: INTN1_C_like Location: 24578-25049 bp Feature: domain Description: INTN1_C_like Location: 24 578-2504 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)