myRT

myRT report for GCA_000835045.1_ASM83504v1

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Seq: JPPP01000165.1 (2228 bp)
Overview 1 RT 1: 243-1818 bp Neighborhood of RT #1 [243, 1874] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 243-1874 bp Ori: KIQ43373.1 Feature: domain Description: RVT_N Location: 249-471 bp Feature: domain Description: RVT_N Location: 249-471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 516-1152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 6-1 1 52 bp Feature: domain Description: GIIM Note: maturase Location: 1203-1437 bp Feature: domain Description: GIIM Note: maturase Location: 1 203-1 437 bp Feature: domain Description: HNHc Note: nucleases Location: 1668-1818 bp Feature: domain Description: HNHc Note: nucleases Location: 1 668-1 81 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JPPP01000044.1 (32878 bp)
Overview 1 RT 1: 5608-9968 bp Neighborhood of RT #1 [5608, 9970] D PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 5608-6708 bp Ori: KIQ44586.1 Feature: domain Description: D Location: 5620-6697 bp Feature: domain Description: D Location: 562 0-6697 bp Feature: gene Location: 6799-7017 bp Ori: KIQ44587.1 Feature: domain Description: PRK09678 Location: 6802-7000 bp Feature: domain Description: PRK09678 Location: 6802 -7000 bp Feature: gene Location: 7421-8194 bp Ori: KIQ44588.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 7556-8009 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 7556-8009 bp Feature: gene Location: 8880-9362 bp Ori: KIQ44589.1 Gene: smpB Feature: domain Description: SmpB Location: 8910-9357 bp Feature: domain Description: SmpB Location: 8910-9357 bp Feature: gene Location: 9494-9970 bp Ori: KIQ44590.1 Feature: domain Description: PRK10724 Location: 9500-9968 bp Feature: domain Description: PRK1072 4 Location: 9500-9968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: JPPP01000031.1 (56131 bp)
Overview 1 RT 1: 40208-44090 bp Neighborhood of RT #1 [40208, 44095] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 40208-40924 bp Ori: KIQ45142.1 Gene: rph Feature: domain Description: rph Location: 40211-40919 bp Feature: domain Description: rph Location: 40211-40919 bp Feature: gene Location: 40990-41631 bp Ori: KIQ45143.1 Gene: pyrE Feature: domain Description: pyrE Location: 40993-41626 bp Feature: domain Description: pyrE Location: 40993 -41626 bp Feature: gene Location: 41929-42888 bp Ori: KIQ45144.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42064-42613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42064-42613 bp Feature: gene Location: 42934-43530 bp Ori: KIQ45145.1 Gene: slmA Feature: domain Description: slmA Location: 42940-43516 bp Feature: domain Description: slmA Location: 42940-43 516 bp Feature: gene Location: 43637-44095 bp Ori: KIQ45146.1 Feature: domain Description: dut Location: 43643-44090 bp Feature: domain Description: dut Location: 43 643 -44090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)