myRT

myRT report for GCA_000835055.1_734_3

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Seq: JPQX01000030.1 (47950 bp)
Overview 1 RT 1: 20669-25029 bp Neighborhood of RT #1 [20669, 25031] D PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 20669-21769 bp Ori: KIQ39924.1 Feature: domain Description: D Location: 20681-21758 bp Feature: domain Description: D Location: 20681 -21 758 bp Feature: gene Location: 21860-22078 bp Ori: KIQ39925.1 Feature: domain Description: PRK09678 Location: 21863-22061 bp Feature: domain Description: PRK09678 Location: 21 863-22061 bp Feature: gene Location: 22482-23255 bp Ori: KIQ39926.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 22617-23070 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 2261 7-23070 bp Feature: gene Location: 23941-24423 bp Ori: KIQ39927.1 Gene: smpB Feature: domain Description: SmpB Location: 23971-24418 bp Feature: domain Description: SmpB Location: 23971 -2441 8 bp Feature: gene Location: 24555-25031 bp Ori: KIQ39928.1 Feature: domain Description: PRK10724 Location: 24561-25029 bp Feature: domain Description: PRK1 0724 Location: 24561 -25029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: JPQX01000007.1 (158085 bp)
Overview 1 RT 1: 104608-108490 bp Neighborhood of RT #1 [104608, 108495] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 104608-105324 bp Ori: KIQ41984.1 Gene: rph Feature: domain Description: rph Location: 104611-105319 bp Feature: domain Description: rph Location: 104611-105319 bp Feature: gene Location: 105390-106031 bp Ori: KIQ41985.1 Gene: pyrE Feature: domain Description: pyrE Location: 105393-106026 bp Feature: domain Description: pyrE Location: 105393-10602 6 bp Feature: gene Location: 106329-107288 bp Ori: KIQ41986.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106464-107013 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106464-107013 bp Feature: gene Location: 107334-107930 bp Ori: KIQ41987.1 Gene: slmA Feature: domain Description: slmA Location: 107340-107916 bp Feature: domain Description: slmA Location: 107340-107916 bp Feature: gene Location: 108037-108495 bp Ori: KIQ41988.1 Feature: domain Description: dut Location: 108043-108490 bp Feature: domain Description: dut Location: 108043-108490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: JPQX01000102.1 (6672 bp)
Overview 1 RT 1: 233-3793 bp Neighborhood of RT #1 [233, 3793] RVT_N RVT-GII GIIM HNHc DUF1281 Feature: gene Location: 233-1864 bp Ori: KIQ38520.1 Feature: domain Description: RVT_N Location: 239-461 bp Feature: domain Description: RVT_N Location: 23 9-461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506-1142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506-1142 bp Feature: domain Description: GIIM Note: maturase Location: 1193-1427 bp Feature: domain Description: GIIM Note: maturase Location: 1193 -1427 bp Feature: domain Description: HNHc Note: nucleases Location: 1658-1808 bp Feature: domain Description: HNHc Note: nucleases Location: 1658-1808 bp Feature: gene Location: 2469-2828 bp Ori: KIQ38521.1 Feature: domain Description: DUF1281 Location: 2478-2793 bp Feature: domain Description: DUF1281 Location: 2478-2793 bp Feature: gene Location: 3482-3793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1281 (pfam06924)