myRT

myRT report for GCA_000835235.1_ASM83523v1

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Seq: CP009999.1 Bacillus thuringiensis serovar kurstaki strain HD 1 plasmid unnamed2, complete sequence (317336 bp)
Overview 1 RT 1: 50970-56920 bp 2 RT 2: 194285-201514 bp 3 RT 3: 245860-258705 bp 4 RT 4: 284934-290685 bp 5 RT 5: 296689-310666 bp Neighborhood of RT #1 [50970, 56928] RhaT RVT-GII GIIM DDE_Tnp_1 ADPrib_exo_Tox Neighborhood of RT #2 [194285, 201514] KOG1000 KOG1000 RVT-GII GIIM Neighborhood of RT #3 [245860, 258705] Ftsk_gamma RVT-GII GIIM HNHc RVT-GII HNHc RVT-GII Intron_maturas2 HNHc Neighborhood of RT #4 [284934, 290714] RVT-GII HNHc LPD1 DUF3854 Neighborhood of RT #5 [296689, 310725] TrbL CwlT_like RVT-GII HNHc RVT-GII HNHc CwlT_like RVT-GII Intron_maturas2 HNHc NlpD Spr Feature: gene Location: 50970-51359 bp Feature: gene Location: 51505-52377 bp Ori: AJK38034.1 Feature: domain Description: RhaT Location: 51532-52366 bp Feature: domain Description: RhaT Location: 51 532-52366 bp Feature: gene Location: 53371-54678 bp Ori: AJK38240.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53656-54295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53656-54295 bp Feature: domain Description: GIIM Note: maturase Location: 54370-54595 bp Feature: domain Description: GIIM Note: maturase Location: 54370-54595 bp Feature: gene Location: 55183-56241 bp Ori: AJK38157.1 Feature: domain Description: DDE_Tnp_1 Location: 55543-56227 bp Feature: domain Description: DDE_Tnp_1 Location: 55543-56227 bp Feature: gene Location: 56617-56928 bp Ori: AJK38044.1 Feature: domain Description: ADPrib_exo_Tox Location: 56638-56920 bp Feature: domain Description: ADPrib_exo_Tox Location: 56638-56920 bp Feature: gene Location: 194285-194998 bp Feature: gene Location: 195015-197420 bp Ori: AJK38153.1 Feature: domain Description: KOG1000 Location: 195726-195942 bp Feature: domain Description: KOG1 000 Location: 1 95726-1 95942 bp Feature: domain Description: KOG1000 Location: 196545-196878 bp Feature: domain Description: KOG1 000 Location: 1 96545-1 96878 bp Feature: gene Location: 197695-199560 bp Ori: AJK38155.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197995-198700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 97995-1 98700 bp Feature: domain Description: GIIM Note: maturase Location: 198787-198970 bp Feature: domain Description: GIIM Note: maturase Location: 1 98787-1 98970 bp Feature: gene Location: 200307-201215 bp Feature: gene Location: 201287-201514 bp Feature: gene Location: 245860-246630 bp Feature: gene Location: 246902-248584 bp Ori: AJK38192.1 Feature: domain Description: Ftsk_gamma Location: 247529-247709 bp Feature: domain Description: Ftsk_gamma Location: 247529-247709 bp Feature: gene Location: 248925-250799 bp Ori: AJK38027.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249225-249930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249225-249930 bp Feature: domain Description: GIIM Note: maturase Location: 250044-250212 bp Feature: domain Description: GIIM Note: maturase Location: 250044-25021 2 bp Feature: domain Description: HNHc Note: nucleases Location: 250560-250725 bp Feature: domain Description: HNHc Note: nucleases Location: 250560-250725 bp Feature: gene Location: 251472-251909 bp Feature: gene Location: 251975-253765 bp Ori: AJK38060.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252272-252968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252272-252968 bp Feature: domain Description: HNHc Note: nucleases Location: 253508-253640 bp Feature: domain Description: HNHc Note: nucleases Location: 253508-253640 bp Feature: gene Location: 254732-256555 bp Ori: AJK37997.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255002-255830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255002-255830 bp Feature: domain Description: Intron_maturas2 Location: 255902-256220 bp Feature: domain Description: Intron_maturas2 Location: 255902-256220 bp Feature: domain Description: HNHc Note: nucleases Location: 256373-256526 bp Feature: domain Description: HNHc Note: nucleases Location: 256373-256526 bp Feature: gene Location: 257156-258301 bp Feature: gene Location: 258319-258705 bp Feature: gene Location: 284934-286025 bp Feature: gene Location: 286460-286714 bp Feature: gene Location: 286746-288542 bp Ori: AJK38061.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287040-287736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287040-287736 bp Feature: domain Description: HNHc Note: nucleases Location: 288336-288411 bp Feature: domain Description: HNHc Note: nucleases Location: 288336-28841 1 bp Feature: gene Location: 288614-289411 bp Ori: AJK37994.1 Feature: domain Description: LPD1 Location: 289160-289355 bp Feature: domain Description: LPD1 Location: 2891 60-289355 bp Feature: gene Location: 289401-290714 bp Ori: AJK38243.1 Feature: domain Description: DUF3854 Location: 290346-290685 bp Feature: domain Description: DUF3854 Location: 290346-290685 bp Feature: gene Location: 296689-300708 bp Ori: AJK38151.1 Feature: domain Description: TrbL Location: 296968-297466 bp Feature: domain Description: TrbL Location: 296968-297466 bp Feature: gene Location: 300705-301700 bp Ori: AJK38169.1 Feature: domain Description: CwlT_like Location: 301554-301677 bp Feature: domain Description: CwlT_like Location: 301 554-301 677 bp Feature: gene Location: 302374-304179 bp Ori: AJK38096.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302668-303364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302668-303364 bp Feature: domain Description: HNHc Note: nucleases Location: 303925-304063 bp Feature: domain Description: HNHc Note: nucleases Location: 303925-304063 bp Feature: gene Location: 305235-307031 bp Ori: AJK38158.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305493-306198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305493-3061 98 bp Feature: domain Description: HNHc Note: nucleases Location: 306759-306894 bp Feature: domain Description: HNHc Note: nucleases Location: 306759-306894 bp Feature: gene Location: 307100-307291 bp Ori: AJK38176.1 Feature: domain Description: CwlT_like Location: 307127-307283 bp Feature: domain Description: CwlT_like Location: 3071 27-307283 bp Feature: gene Location: 307867-309690 bp Ori: AJK38104.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 308131-308965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3081 31 -308965 bp Feature: domain Description: Intron_maturas2 Location: 309034-309373 bp Feature: domain Description: Intron_maturas2 Location: 309034-309373 bp Feature: domain Description: HNHc Note: nucleases Location: 309511-309667 bp Feature: domain Description: HNHc Note: nucleases Location: 30951 1 -309667 bp Feature: gene Location: 309692-309826 bp Feature: gene Location: 309850-310725 bp Ori: AJK38160.1 Feature: domain Description: NlpD Location: 309865-310294 bp Feature: domain Description: NlpD Location: 309865-31 0294 bp Feature: domain Description: Spr Location: 310330-310666 bp Feature: domain Description: Spr Location: 31 0330-31 0666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhaT (TIGR00776), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), ADPrib_exo_Tox (pfam03496), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), Ftsk_gamma (smart00843), HNHc (smart00507), Intron_maturas2 (pfam01348), LPD1 (pfam18796)
DUF3854 (pfam12965), TrbL (pfam04610), CwlT_like, NlpD (COG0739), Spr (COG0791)

Seq: CP010003.1 Bacillus thuringiensis serovar kurstaki strain HD 1 plasmid unnamed6, complete sequence (69317 bp)
Overview 1 RT 1: 37647-40149 bp Neighborhood of RT #1 [37647, 40149] RVT-GII GIIM Feature: gene Location: 37647-37763 bp Feature: gene Location: 37962-38195 bp Feature: gene Location: 38489-39796 bp Ori: AJK38581.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38774-39413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38774-39413 bp Feature: domain Description: GIIM Note: maturase Location: 39488-39713 bp Feature: domain Description: GIIM Note: maturase Location: 39488-39713 bp Feature: gene Location: 39830-39973 bp Feature: gene Location: 39970-40149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CP010002.1 Bacillus thuringiensis serovar kurstaki strain HD 1 plasmid unnamed5, complete sequence (80285 bp)
Overview 1 RT 1: 52813-59120 bp Neighborhood of RT #1 [52813, 59120] VirB4_CagE Lysozyme_like RVT-GII HNHc Lysozyme_like Spr Feature: gene Location: 52813-54747 bp Ori: AJK38495.1 Feature: domain Description: VirB4_CagE Location: 53143-54658 bp Feature: domain Description: VirB4_CagE Location: 53 143 -54658 bp Feature: gene Location: 54749-55135 bp Ori: AJK38515.1 Feature: domain Description: Lysozyme_like Location: 54968-55115 bp Feature: domain Description: Lysozyme_like Location: 54968-55115 bp Feature: gene Location: 55809-57614 bp Ori: AJK38455.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56103-56799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56103 -56799 bp Feature: domain Description: HNHc Note: nucleases Location: 57360-57498 bp Feature: domain Description: HNHc Note: nucleases Location: 573 60-57498 bp Feature: gene Location: 57730-58488 bp Ori: AJK38535.1 Feature: domain Description: Lysozyme_like Location: 57733-58069 bp Feature: domain Description: Lysozyme_like Location: 5773 3 -58069 bp Feature: domain Description: Spr Location: 58084-58471 bp Feature: domain Description: Spr Location: 58084-58471 bp Feature: gene Location: 58512-59120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4_CagE (TIGR00929), Lysozyme_like (pfam13702), RVT-GII, HNHc (smart00507), Spr (COG0791)

Seq: CP009998.1 Bacillus thuringiensis serovar kurstaki strain HD 1 plasmid unnamed1, complete sequence (412022 bp)
Overview 1 RT 1: 161857-176295 bp 2 RT 2: 310662-322973 bp 3 RT 3: 369782-383771 bp 4 RT 4: 401926-406475 bp Neighborhood of RT #1 [161857, 176295] HTH_XRE LbH_MAT_like RVT-GII GIIM DDE_Tnp_1 AE_Prim_S_like RVT-UG10 RapH_N TPR TPR Neighborhood of RT #2 [310662, 323464] rpsA TraG-D_C Ftsk_gamma Ftsk_gamma RVT-GII GIIM HNHc RVT-GII RVT-GII Intron_maturas2 HNHc COG4584 Neighborhood of RT #3 [369782, 383830] CwlT_like RVT-GII HNHc RVT-GII HNHc CwlT_like RVT-GII Intron_maturas2 HNHc NlpD Spr Neighborhood of RT #4 [401926, 406483] DDE_Tnp_1 RVT-GII GIIM Rve Feature: gene Location: 161857-162183 bp Ori: AJK37602.1 Feature: domain Description: HTH_XRE Location: 161872-162043 bp Feature: domain Description: HTH_XRE Location: 161872-16204 3 bp Feature: gene Location: 162890-163456 bp Ori: AJK37819.1 Feature: domain Description: LbH_MAT_like Location: 162998-163394 bp Feature: domain Description: LbH_MAT_like Location: 162998-163394 bp Feature: gene Location: 164132-165439 bp Ori: AJK37670.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164417-165056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164 4 17-165056 bp Feature: domain Description: GIIM Note: maturase Location: 165131-165356 bp Feature: domain Description: GIIM Note: maturase Location: 165131-165356 bp Feature: gene Location: 165473-165616 bp Feature: gene Location: 165944-167002 bp Ori: AJK37748.1 Feature: domain Description: DDE_Tnp_1 Location: 166301-166988 bp Feature: domain Description: DDE_Tnp_1 Location: 166301-166988 bp Feature: gene Location: 166980-167597 bp Feature: gene Location: 167607-168032 bp Feature: gene Location: 168471-174110 bp Ori: AJK37736.1 Feature: domain Description: AE_Prim_S_like Location: 168681-168900 bp Feature: domain Description: AE_Prim_S_like Location: 168681-168900 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 169887-170541 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 169887-17054 1 bp Feature: gene Location: 175076-176167 bp Ori: AJK37674.1 Feature: domain Description: RapH_N Location: 175097-175268 bp Feature: domain Description: RapH_N Location: 175097-175268 bp Feature: domain Description: TPR Location: 175403-175670 bp Feature: domain Description: TPR Location: 1754 03-175670 bp Feature: domain Description: TPR Location: 175715-176126 bp Feature: domain Description: TPR Location: 175715-176126 bp Feature: gene Location: 176164-176295 bp Feature: gene Location: 310662-311645 bp Ori: AJK37682.1 Feature: domain Description: rpsA Location: 310929-311466 bp Feature: domain Description: rpsA Location: 310929-3114 66 bp Feature: gene Location: 311904-313604 bp Ori: AJK37797.1 Feature: domain Description: TraG-D_C Location: 311916-312234 bp Feature: domain Description: TraG-D_C Location: 311916-312234 bp Feature: domain Description: Ftsk_gamma Location: 312594-312774 bp Feature: domain Description: Ftsk_gamma Location: 312594 -312774 bp Feature: domain Description: Ftsk_gamma Location: 312927-313101 bp Feature: domain Description: Ftsk_gamma Location: 312927-313101 bp Feature: gene Location: 313837-315711 bp Ori: AJK37776.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 314137-314842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 314 137-314 84 2 bp Feature: domain Description: GIIM Note: maturase Location: 314956-315124 bp Feature: domain Description: GIIM Note: maturase Location: 314 956-315124 bp Feature: gene Location: 316383-316820 bp Feature: gene Location: 316886-317350 bp Ori: AJK37621.1 Feature: domain Description: HNHc Note: nucleases Location: 317093-317225 bp Feature: domain Description: HNHc Note: nucleases Location: 317093-317225 bp Feature: gene Location: 317527-318675 bp Ori: AJK37771.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 317824-318520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 317824 -318520 bp Feature: gene Location: 319642-321465 bp Ori: AJK37768.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319912-320740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319912-32074 0 bp Feature: domain Description: Intron_maturas2 Location: 320812-321130 bp Feature: domain Description: Intron_maturas2 Location: 320812-321130 bp Feature: domain Description: HNHc Note: nucleases Location: 321283-321436 bp Feature: domain Description: HNHc Note: nucleases Location: 321283-3214 36 bp Feature: gene Location: 322170-322724 bp Feature: gene Location: 322760-323464 bp Ori: AJK37609.1 Feature: domain Description: COG4584 Location: 322763-322973 bp Feature: domain Description: COG4 584 Location: 322763-322973 bp Feature: gene Location: 369782-373816 bp Feature: gene Location: 373813-374811 bp Ori: AJK37753.1 Feature: domain Description: CwlT_like Location: 374665-374785 bp Feature: domain Description: CwlT_like Location: 374 665-374 785 bp Feature: gene Location: 375485-377290 bp Ori: AJK37766.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 375779-376475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 375779-3764 75 bp Feature: domain Description: HNHc Note: nucleases Location: 377036-377174 bp Feature: domain Description: HNHc Note: nucleases Location: 377036-377174 bp Feature: gene Location: 378346-380142 bp Ori: AJK37881.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 378604-379309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 378604 -379309 bp Feature: domain Description: HNHc Note: nucleases Location: 379870-380005 bp Feature: domain Description: HNHc Note: nucleases Location: 379870-380005 bp Feature: gene Location: 380211-380402 bp Ori: AJK37820.1 Feature: domain Description: CwlT_like Location: 380238-380391 bp Feature: domain Description: CwlT_like Location: 380238-380391 bp Feature: gene Location: 380978-382801 bp Ori: AJK37616.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381242-382076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38124 2-382076 bp Feature: domain Description: Intron_maturas2 Location: 382145-382484 bp Feature: domain Description: Intron_maturas2 Location: 38214 5-3824 84 bp Feature: domain Description: HNHc Note: nucleases Location: 382622-382778 bp Feature: domain Description: HNHc Note: nucleases Location: 382622-382778 bp Feature: gene Location: 382803-382937 bp Feature: gene Location: 382961-383830 bp Ori: AJK37751.1 Feature: domain Description: NlpD Location: 382976-383402 bp Feature: domain Description: NlpD Location: 382976-3834 02 bp Feature: domain Description: Spr Location: 383435-383771 bp Feature: domain Description: Spr Location: 3834 35-383771 bp Feature: gene Location: 401926-402984 bp Ori: AJK37697.1 Feature: domain Description: DDE_Tnp_1 Location: 402286-402970 bp Feature: domain Description: DDE_Tnp_1 Location: 4 02286-4 02970 bp Feature: gene Location: 403312-403455 bp Feature: gene Location: 403489-404796 bp Ori: AJK37724.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403774-404413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 03774 -4 04 4 13 bp Feature: domain Description: GIIM Note: maturase Location: 404488-404713 bp Feature: domain Description: GIIM Note: maturase Location: 4 04 4 88-4 04 713 bp Feature: gene Location: 405130-405576 bp Feature: gene Location: 405971-406483 bp Ori: AJK37704.1 Feature: domain Description: Rve Location: 405977-406475 bp Feature: domain Description: Rve Location: 4 05977-4 064 75 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), LbH_MAT_like (cd04647), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), AE_Prim_S_like (cl01287), RVT-UG10, RapH_N (pfam18801), TPR (smart00028), rpsA (TIGR00717)
TraG-D_C (pfam12696), Ftsk_gamma (smart00843), HNHc (smart00507), Intron_maturas2 (pfam01348), COG4584 (Transposase ), CwlT_like, NlpD (COG0739), Spr (COG0791), Rve (COG3316)

Seq: CP010005.1 Bacillus thuringiensis serovar kurstaki strain HD 1, complete genome (5675189 bp)
Overview 1 RT 1: 214318-219809 bp 2 RT 2: 337806-343595 bp 3 RT 3: 610040-617173 bp 4 RT 4: 652658-658070 bp 5 RT 5: 1831320-1839361 bp 6 RT 6: 2034239-2040587 bp 7 RT 7: 2211666-2217821 bp 8 RT 8: 2542080-2548404 bp 9 RT 9: 2555631-2561840 bp 10 RT 10: 2747700-2753269 bp 11 RT 11: 3201662-3206418 bp 12 RT 12: 3666654-3674676 bp 13 RT 13: 3734638-3740264 bp 14 RT 14: 4752024-4757851 bp 15 RT 15: 5141208-5147905 bp 16 RT 16: 5638110-5643543 bp Neighborhood of RT #1 [214318, 220000] SrmB DDE_Tnp_1 RVT-GII GIIM SrmB RRM_BsYxiN_like DUF1836 Neighborhood of RT #2 [337806, 343621] uvsE DDE_Tnp_1 RVT-GII GIIM UvdE cls Neighborhood of RT #3 [610040, 617178] CBM_4_9 CBM_4_9 DDE_Tnp_1 RVT-GII GIIM OmpR Neighborhood of RT #4 [652658, 658072] NupC RVT-GII HNHc NupC NupC Neighborhood of RT #5 [1831320, 1839384] rnc SMC_prok_B RVT-GII HNHc SMC_prok_B PRK10416 Neighborhood of RT #6 [2034239, 2040652] CdnL FadH RVT-GII HNHc OYE_like_FMN GltS_FMN Neighborhood of RT #7 [2211666, 2217952] DDE_Tnp_1 RVT-GII GIIM COG4584 DUF1796 Neighborhood of RT #8 [2542080, 2548439] DDE_Tnp_1 RVT-GII GIIM Sulfotransfer_2 WcaG Neighborhood of RT #9 [2555631, 2562004] OmpR RVT-GII HNHc HATPase_BceS-YxdK-YvcQ-like Uup Uup Neighborhood of RT #10 [2747700, 2753274] HTH_ARAC DDE_Tnp_1 RVT-GII GIIM PRK06914 Neighborhood of RT #11 [3201662, 3206429] RimL RVT-GII Intron_maturas2 HNHc Lysozyme_like YxeA Neighborhood of RT #12 [3666654, 3674676] Smc PhageMin_Tail YqbO ABC_SMC1_euk RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #13 [3734638, 3740264] PRK13523 CC3_like_SDR_a RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #14 [4752024, 4757851] DAP2 RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #15 [5141208, 5147907] TlyC VOC_Bs_YwkD_like RVT-GII GIIM DDE_Tnp_1 NupC Neighborhood of RT #16 [5638110, 5643635] DppC DppB RVT-GII GIIM DDE_Tnp_1 DppB Feature: gene Location: 214318-214746 bp Ori: AJK39064.1 Feature: domain Description: SrmB Location: 214324-214636 bp Feature: domain Description: SrmB Location: 214324-214636 bp Feature: gene Location: 214724-215782 bp Ori: AJK39540.1 Feature: domain Description: DDE_Tnp_1 Location: 215081-215768 bp Feature: domain Description: DDE_Tnp_1 Location: 215 081-215 768 bp Feature: gene Location: 216287-217594 bp Ori: AJK43600.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216572-217211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2165 72-217211 bp Feature: domain Description: GIIM Note: maturase Location: 217286-217511 bp Feature: domain Description: GIIM Note: maturase Location: 217286-2175 11 bp Feature: gene Location: 218350-219399 bp Ori: AJK43709.1 Feature: domain Description: SrmB Location: 218353-219166 bp Feature: domain Description: SrmB Location: 21835 3-219166 bp Feature: domain Description: RRM_BsYxiN_like Location: 219175-219388 bp Feature: domain Description: RRM_BsYxiN_like Location: 219175 -219388 bp Feature: gene Location: 219440-220000 bp Ori: AJK42753.1 Feature: domain Description: DUF1836 Location: 219494-219809 bp Feature: domain Description: DUF1836 Location: 219494-219809 bp Feature: gene Location: 337806-338366 bp Ori: AJK40247.1 Gene: uvdE Feature: domain Description: uvsE Location: 337809-338322 bp Feature: domain Description: uvsE Location: 337809-338322 bp Feature: gene Location: 338592-339650 bp Ori: AJK44347.1 Feature: domain Description: DDE_Tnp_1 Location: 338949-339636 bp Feature: domain Description: DDE_Tnp_1 Location: 338949-339636 bp Feature: gene Location: 340155-341462 bp Ori: AJK42186.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340440-341079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340440-341079 bp Feature: domain Description: GIIM Note: maturase Location: 341154-341379 bp Feature: domain Description: GIIM Note: maturase Location: 34115 4-341379 bp Feature: gene Location: 342081-342395 bp Ori: AJK43723.1 Feature: domain Description: UvdE Location: 342096-342357 bp Feature: domain Description: UvdE Location: 342096-34235 7 bp Feature: gene Location: 342428-343621 bp Ori: AJK41917.1 Gene: cls Feature: domain Description: cls Location: 342515-343595 bp Feature: domain Description: cls Location: 3425 15 -3435 95 bp Feature: gene Location: 610040-610972 bp Ori: AJK41437.1 Feature: domain Description: CBM_4_9 Location: 610142-610484 bp Feature: domain Description: CBM_4_9 Location: 610142-610484 bp Feature: domain Description: CBM_4_9 Location: 610559-610916 bp Feature: domain Description: CBM_4_9 Location: 6105 5 9-610916 bp Feature: gene Location: 611316-612374 bp Ori: AJK40691.1 Feature: domain Description: DDE_Tnp_1 Location: 611673-612360 bp Feature: domain Description: DDE_Tnp_1 Location: 611673-612360 bp Feature: gene Location: 612879-614186 bp Ori: AJK42990.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 613164-613803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 613164-613803 bp Feature: domain Description: GIIM Note: maturase Location: 613878-614103 bp Feature: domain Description: GIIM Note: maturase Location: 613878-614103 bp Feature: gene Location: 614930-615250 bp Feature: gene Location: 616516-617178 bp Ori: AJK43839.1 Feature: domain Description: OmpR Location: 616519-617173 bp Feature: domain Description: OmpR Location: 6165 19-617173 bp Feature: gene Location: 652658-653563 bp Ori: AJK41515.1 Feature: domain Description: NupC Location: 652661-653552 bp Feature: domain Description: NupC Location: 65 2661-65 35 5 2 bp Feature: gene Location: 654006-654260 bp Feature: gene Location: 654292-656088 bp Ori: AJK42490.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654586-655282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65 45 86-65 5 282 bp Feature: domain Description: HNHc Note: nucleases Location: 655882-655957 bp Feature: domain Description: HNHc Note: nucleases Location: 65 5 882-65 5 95 7 bp Feature: gene Location: 656275-656541 bp Ori: AJK42599.1 Feature: domain Description: NupC Location: 656278-656539 bp Feature: domain Description: NupC Location: 65 6278-65 65 39 bp Feature: gene Location: 656891-658072 bp Ori: AJK43735.1 Feature: domain Description: NupC Location: 656894-658070 bp Feature: domain Description: NupC Location: 65 6894-65 8070 bp Feature: gene Location: 1831320-1832057 bp Ori: AJK41579.1 Gene: rnc Feature: domain Description: rnc Location: 1831371-1832049 bp Feature: domain Description: rnc Location: 1831371-1832049 bp Feature: gene Location: 1832204-1832695 bp Ori: AJK40093.1 Feature: domain Description: SMC_prok_B Location: 1832210-1832678 bp Feature: domain Description: SMC_prok_B Location: 1832210-1832678 bp Feature: gene Location: 1833369-1835174 bp Ori: AJK38774.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1833663-1834359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1833663-183435 9 bp Feature: domain Description: HNHc Note: nucleases Location: 1834920-1835058 bp Feature: domain Description: HNHc Note: nucleases Location: 1834920-1835 05 8 bp Feature: gene Location: 1835518-1838379 bp Ori: AJK43086.1 Gene: smc Feature: domain Description: SMC_prok_B Location: 1835524-1838347 bp Feature: domain Description: SMC_prok_B Location: 1835 5 24-1838347 bp Feature: gene Location: 1838395-1839384 bp Ori: AJK44058.1 Gene: ftsY Feature: domain Description: PRK10416 Location: 1838419-1839361 bp Feature: domain Description: PRK10416 Location: 1838419-1839361 bp Feature: gene Location: 2034239-2034715 bp Ori: AJK41005.1 Feature: domain Description: CdnL Location: 2034257-2034710 bp Feature: domain Description: CdnL Location: 203425 7-2034710 bp Feature: gene Location: 2035277-2035531 bp Ori: AJK41944.1 Feature: domain Description: FadH Location: 2035364-2035496 bp Feature: domain Description: FadH Location: 2035 364-2035 496 bp Feature: gene Location: 2036194-2037999 bp Ori: AJK43828.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2036488-2037184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2036488-2037184 bp Feature: domain Description: HNHc Note: nucleases Location: 2037745-2037883 bp Feature: domain Description: HNHc Note: nucleases Location: 2037745 -2037883 bp Feature: gene Location: 2038051-2039010 bp Ori: AJK42527.1 Feature: domain Description: OYE_like_FMN Location: 2038102-2038981 bp Feature: domain Description: OYE_like_FMN Location: 2038102-2038981 bp Feature: gene Location: 2039078-2040652 bp Ori: AJK44175.1 Feature: domain Description: GltS_FMN Location: 2039225-2040587 bp Feature: domain Description: GltS_FMN Location: 2039225 -20405 87 bp Feature: gene Location: 2211666-2211971 bp Feature: gene Location: 2212133-2213191 bp Ori: AJK41394.1 Feature: domain Description: DDE_Tnp_1 Location: 2212490-2213177 bp Feature: domain Description: DDE_Tnp_1 Location: 2212490-2213177 bp Feature: gene Location: 2213696-2215003 bp Ori: AJK39333.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2213981-2214620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2213981-2214620 bp Feature: domain Description: GIIM Note: maturase Location: 2214695-2214920 bp Feature: domain Description: GIIM Note: maturase Location: 2214695 -2214920 bp Feature: gene Location: 2215650-2216597 bp Ori: AJK43660.1 Feature: domain Description: COG4584 Location: 2216064-2216454 bp Feature: domain Description: COG45 84 Location: 2216064-221645 4 bp Feature: gene Location: 2217278-2217952 bp Ori: AJK41283.1 Feature: domain Description: DUF1796 Location: 2217317-2217821 bp Feature: domain Description: DUF1796 Location: 2217317-2217821 bp Feature: gene Location: 2542080-2542280 bp Feature: gene Location: 2542606-2543664 bp Ori: AJK42473.1 Feature: domain Description: DDE_Tnp_1 Location: 2542963-2543650 bp Feature: domain Description: DDE_Tnp_1 Location: 25 42963-25 4365 0 bp Feature: gene Location: 2544169-2545476 bp Ori: AJK43712.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2544454-2545093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 4445 4-25 45 093 bp Feature: domain Description: GIIM Note: maturase Location: 2545168-2545393 bp Feature: domain Description: GIIM Note: maturase Location: 25 45 168-25 45 393 bp Feature: gene Location: 2546424-2547212 bp Ori: AJK41431.1 Feature: domain Description: Sulfotransfer_2 Location: 2546487-2547198 bp Feature: domain Description: Sulfotransfer_2 Location: 25 46487-25 47198 bp Feature: gene Location: 2547582-2548439 bp Ori: AJK39589.1 Feature: domain Description: WcaG Location: 2547585-2548404 bp Feature: domain Description: WcaG Location: 25 475 85 -25 48404 bp Feature: gene Location: 2555631-2556338 bp Ori: AJK44371.1 Feature: domain Description: OmpR Location: 2555640-2556309 bp Feature: domain Description: OmpR Location: 25 5 5 640-25 5 6309 bp Feature: gene Location: 2556335-2556586 bp Feature: gene Location: 2557260-2559065 bp Ori: AJK39406.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2557554-2558250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 5 75 5 4-25 5 825 0 bp Feature: domain Description: HNHc Note: nucleases Location: 2558811-2558949 bp Feature: domain Description: HNHc Note: nucleases Location: 25 5 8811-25 5 8949 bp Feature: gene Location: 2559316-2559924 bp Ori: AJK39362.1 Feature: domain Description: HATPase_BceS-YxdK-YvcQ-like Location: 2559589-2559913 bp Feature: domain Description: HATPase_BceS-YxdK-YvcQ-like Location: 25 5 95 89-25 5 9913 bp Feature: gene Location: 2560376-2562004 bp Ori: AJK43509.1 Gene: ccmA Feature: domain Description: Uup Location: 2560385-2560616 bp Feature: domain Description: Uup Location: 25 60385 -25 60616 bp Feature: domain Description: Uup Location: 2560631-2561840 bp Feature: domain Description: Uup Location: 25 60631-25 61840 bp Feature: gene Location: 2747700-2747972 bp Ori: AJK39403.1 Feature: domain Description: HTH_ARAC Location: 2747715-2747958 bp Feature: domain Description: HTH_ARAC Location: 2747715 -274795 8 bp Feature: gene Location: 2748063-2749016 bp Ori: AJK39829.1 Feature: domain Description: DDE_Tnp_1 Location: 2748420-2748843 bp Feature: domain Description: DDE_Tnp_1 Location: 2748420-2748843 bp Feature: gene Location: 2749705-2750931 bp Ori: AJK40181.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2749909-2750548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2749909-275 05 48 bp Feature: domain Description: GIIM Note: maturase Location: 2750623-2750848 bp Feature: domain Description: GIIM Note: maturase Location: 275 0623-275 0848 bp Feature: gene Location: 2751550-2752293 bp Feature: gene Location: 2752429-2753274 bp Ori: AJK38727.1 Feature: domain Description: PRK06914 Location: 2752432-2753269 bp Feature: domain Description: PRK06914 Location: 275 2432-275 3269 bp Feature: gene Location: 3201662-3202168 bp Ori: AJK43050.1 Feature: domain Description: RimL Location: 3201671-3202166 bp Feature: domain Description: RimL Location: 3201671-3202166 bp Feature: gene Location: 3202532-3202663 bp Feature: gene Location: 3202665-3204488 bp Ori: AJK43879.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3202929-3203763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3202929-3203763 bp Feature: domain Description: Intron_maturas2 Location: 3203832-3204171 bp Feature: domain Description: Intron_maturas2 Location: 3203832-3204171 bp Feature: domain Description: HNHc Note: nucleases Location: 3204309-3204465 bp Feature: domain Description: HNHc Note: nucleases Location: 3204309-3204465 bp Feature: gene Location: 3205064-3205645 bp Ori: AJK39979.1 Feature: domain Description: Lysozyme_like Location: 3205199-3205634 bp Feature: domain Description: Lysozyme_like Location: 3205 199-3205 634 bp Feature: gene Location: 3206061-3206429 bp Ori: AJK43237.1 Feature: domain Description: YxeA Location: 3206112-3206418 bp Feature: domain Description: YxeA Location: 3206112-3206418 bp Feature: gene Location: 3666654-3670502 bp Ori: AJK43515.1 Feature: domain Description: Smc Location: 3666741-3667395 bp Feature: domain Description: Smc Location: 3666741-3667395 bp Feature: domain Description: PhageMin_Tail Location: 3667554-3668343 bp Feature: domain Description: PhageMin_Tail Location: 36675 5 4-3668343 bp Feature: domain Description: YqbO Location: 3668508-3668841 bp Feature: domain Description: YqbO Location: 36685 08-3668841 bp Feature: domain Description: ABC_SMC1_euk Location: 3668928-3669915 bp Feature: domain Description: ABC_SMC1_euk Location: 3668928-3669915 bp Feature: gene Location: 3670517-3670780 bp Feature: gene Location: 3671324-3672631 bp Ori: AJK42267.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3671609-3672248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3671609-3672248 bp Feature: domain Description: GIIM Note: maturase Location: 3672323-3672548 bp Feature: domain Description: GIIM Note: maturase Location: 3672323-36725 48 bp Feature: gene Location: 3673136-3674194 bp Ori: AJK43877.1 Feature: domain Description: DDE_Tnp_1 Location: 3673493-3674180 bp Feature: domain Description: DDE_Tnp_1 Location: 3673493-3674180 bp Feature: gene Location: 3674359-3674676 bp Feature: gene Location: 3734638-3735675 bp Ori: AJK42321.1 Feature: domain Description: PRK13523 Location: 3734650-3735652 bp Feature: domain Description: PRK135 23 Location: 373465 0-3735 65 2 bp Feature: gene Location: 3735705-3736364 bp Ori: AJK39347.1 Feature: domain Description: CC3_like_SDR_a Location: 3735720-3736350 bp Feature: domain Description: CC3_like_SDR_a Location: 3735 720-373635 0 bp Feature: gene Location: 3737196-3738503 bp Ori: AJK41272.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3737481-3738120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3737481-3738120 bp Feature: domain Description: GIIM Note: maturase Location: 3738195-3738420 bp Feature: domain Description: GIIM Note: maturase Location: 3738195 -3738420 bp Feature: gene Location: 3739112-3740065 bp Ori: AJK44402.1 Feature: domain Description: DDE_Tnp_1 Location: 3739469-3739892 bp Feature: domain Description: DDE_Tnp_1 Location: 3739469-3739892 bp Feature: gene Location: 3740043-3740264 bp Feature: gene Location: 4752024-4753406 bp Ori: AJK39148.1 Feature: domain Description: DAP2 Location: 4752555-4753299 bp Feature: domain Description: DAP2 Location: 475 25 5 5 -475 3299 bp Feature: gene Location: 4753502-4753888 bp Feature: gene Location: 4754728-4756035 bp Ori: AJK43769.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4755013-4755652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475 5 013-475 5 65 2 bp Feature: domain Description: GIIM Note: maturase Location: 4755727-4755952 bp Feature: domain Description: GIIM Note: maturase Location: 475 5 727-475 5 95 2 bp Feature: gene Location: 4756540-4756896 bp Ori: AJK41074.1 Gene: tnp Feature: domain Description: DDE_Tnp_1 Location: 4756696-4756882 bp Feature: domain Description: DDE_Tnp_1 Location: 475 6696-475 6882 bp Feature: gene Location: 4757390-4757851 bp Feature: gene Location: 5141208-5142506 bp Ori: AJK43292.1 Feature: domain Description: TlyC Location: 5141217-5142498 bp Feature: domain Description: TlyC Location: 5 141217-5 142498 bp Feature: gene Location: 5142615-5143001 bp Ori: AJK43738.1 Feature: domain Description: VOC_Bs_YwkD_like Location: 5142630-5142996 bp Feature: domain Description: VOC_Bs_YwkD_like Location: 5 142630-5 142996 bp Feature: gene Location: 5143757-5145064 bp Ori: AJK39457.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5144042-5144681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 144042-5 144681 bp Feature: domain Description: GIIM Note: maturase Location: 5144756-5144981 bp Feature: domain Description: GIIM Note: maturase Location: 5 14475 6-5 144981 bp Feature: gene Location: 5145569-5146627 bp Ori: AJK40012.1 Feature: domain Description: DDE_Tnp_1 Location: 5145926-5146613 bp Feature: domain Description: DDE_Tnp_1 Location: 5 145 926-5 146613 bp Feature: gene Location: 5146729-5147907 bp Ori: AJK42631.1 Feature: domain Description: NupC Location: 5146732-5147905 bp Feature: domain Description: NupC Location: 5 146732-5 147905 bp Feature: gene Location: 5638110-5639030 bp Ori: AJK42713.1 Feature: domain Description: DppC Location: 5638167-5639025 bp Feature: domain Description: DppC Location: 5 638167-5 639025 bp Feature: gene Location: 5639043-5639378 bp Ori: AJK41202.1 Feature: domain Description: DppB Location: 5639046-5639373 bp Feature: domain Description: DppB Location: 5 639046-5 639373 bp Feature: gene Location: 5640077-5641384 bp Ori: AJK39560.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5640362-5641001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 640362-5 641001 bp Feature: domain Description: GIIM Note: maturase Location: 5641076-5641301 bp Feature: domain Description: GIIM Note: maturase Location: 5 641076-5 641301 bp Feature: gene Location: 5641889-5642947 bp Ori: AJK41818.1 Feature: domain Description: DDE_Tnp_1 Location: 5642246-5642933 bp Feature: domain Description: DDE_Tnp_1 Location: 5 642246-5 642933 bp Feature: gene Location: 5642925-5643635 bp Ori: AJK44403.1 Feature: domain Description: DppB Location: 5642934-5643543 bp Feature: domain Description: DppB Location: 5 642934-5 6435 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SrmB (COG0513), DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), RRM_BsYxiN_like (cd12500), DUF1836 (pfam08876), uvsE (PRK02308), UvdE (pfam03851), cls, CBM_4_9 (pfam02018)
OmpR (COG0745), NupC (COG1972), HNHc (smart00507), rnc (PRK00102), SMC_prok_B (TIGR02168), PRK10416 (signal recognition particle-docking protein FtsY; Provisional), CdnL (COG1329), FadH (COG1902), OYE_like_FMN (cd02933), GltS_FMN (cd02808)
COG4584 (Transposase ), DUF1796 (pfam08795), Sulfotransfer_2 (pfam03567), WcaG (COG0451), HATPase_BceS-YxdK-YvcQ-like (cd16948), Uup (COG0488), HTH_ARAC (smart00342), PRK06914 (SDR family oxidoreductase), RimL (COG1670), Intron_maturas2 (pfam01348)
Lysozyme_like (pfam13702), YxeA (COG5294), Smc (COG1196), PhageMin_Tail (pfam10145), YqbO (COG5280), ABC_SMC1_euk (cd03275), PRK13523 (NADPH dehydrogenase NamA; Provisional), CC3_like_SDR_a (cd05250), DAP2 (COG1506), TlyC (COG1253)
VOC_Bs_YwkD_like (cd08352), DppC (COG1173), DppB (COG0601)