myRT

myRT report for GCA_000875945.1_TWA4_1

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Seq: JPZU01000001.1 Lachnospiraceae bacterium TWA4 TWA4_scaffold00001, whole genome shotgun sequence (3119729 bp)
Overview 1 RT 1: 181152-185262 bp 2 RT 2: 854097-861252 bp 3 RT 3: 1539565-1545649 bp Neighborhood of RT #1 [181152, 185318] InsE RVT-CRISPR Cas2_I_II_III Cas1_I-II-III Neighborhood of RT #2 [854097, 861269] dnaE DUF3139 RVT-GII HNH dnaE PTS-HPr Neighborhood of RT #3 [1539565, 1545654] RVT-GII GIIM Phage_portal COG1373 Feature: gene Location: 181152-181481 bp Ori: KIR01319.1 Feature: domain Description: InsE Location: 181329-181473 bp Feature: domain Description: InsE Location: 1 81 329-1 81 473 bp Feature: gene Location: 181530-181751 bp Feature: gene Location: 183234-184013 bp Ori: KIR01321.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 183441-183993 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 83441 -1 83993 bp Feature: gene Location: 184025-184333 bp Ori: KIR01322.1 Feature: domain Description: Cas2_I_II_III Location: 184043-184292 bp Feature: domain Description: Cas2_I_II_III Location: 1 84043-1 84292 bp Feature: gene Location: 184326-185318 bp Ori: KIR01323.1 Feature: domain Description: Cas1_I-II-III Location: 184338-185262 bp Feature: domain Description: Cas1 _I-II-III Location: 1 84338-1 85262 bp Feature: gene Location: 854097-855989 bp Ori: KIR01948.1 Feature: domain Description: dnaE Location: 854169-855951 bp Feature: domain Description: dnaE Location: 8541 69-855951 bp Feature: gene Location: 856154-856474 bp Ori: KIR01949.1 Feature: domain Description: DUF3139 Location: 856184-856403 bp Feature: domain Description: DUF31 39 Location: 8561 84-856403 bp Feature: gene Location: 856566-858434 bp Ori: KIR01950.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 856884-857589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 856884-857589 bp Feature: domain Description: HNH Note: nucleases Location: 858219-858354 bp Feature: domain Description: HNH Note: nucleases Location: 85821 9-858354 bp Feature: gene Location: 859236-860939 bp Ori: KIR01951.1 Feature: domain Description: dnaE Location: 859275-860925 bp Feature: domain Description: dnaE Location: 859275-860925 bp Feature: gene Location: 861009-861269 bp Ori: KIR01952.1 Feature: domain Description: PTS-HPr Location: 861018-861252 bp Feature: domain Description: PTS-HPr Location: 861 01 8-861 252 bp Feature: gene Location: 1539565-1541025 bp Feature: gene Location: 1541078-1541608 bp Feature: gene Location: 1542340-1543347 bp Ori: KIR02558.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542343-1542901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 542343-1 542901 bp Feature: domain Description: GIIM Note: maturase Location: 1542961-1543165 bp Feature: domain Description: GIIM Note: maturase Location: 1 542961 -1 5431 65 bp Feature: gene Location: 1543344-1544258 bp Ori: KIR02559.1 Feature: domain Description: Phage_portal Location: 1543482-1544178 bp Feature: domain Description: Phage_portal Location: 1 543482-1 5441 78 bp Feature: gene Location: 1544335-1545654 bp Ori: KIR02560.1 Feature: domain Description: COG1373 Location: 1544353-1545649 bp Feature: domain Description: COG1 373 Location: 1 544353-1 545649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-CRISPR, Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), dnaE (PRK07374), DUF3139 (pfam11337), RVT-GII, HNH (pfam01844), PTS-HPr (pfam00381), GIIM (pfam08388)
Phage_portal (pfam04860), COG1373 (Predicted ATPase, AAA+ superfamily )