myRT

myRT report for GCA_000876305.1_ASM87630v1

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Seq: JAUD01000051.1 Streptococcus equi subsp. zooepidemicus Sz12is contig000039, whole genome shotgun sequence (63697 bp)
Overview 1 RT 1: 598-6093 bp 2 RT 2: 21476-31658 bp 3 RT 3: 38769-46458 bp Neighborhood of RT #1 [598, 6149] Transposase_mut VirD2 Streptin-Immun RVT-GII Intron_maturas2 Relaxase MobC Neighborhood of RT #2 [21476, 31658] RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Neighborhood of RT #3 [38769, 46541] PRK06149 Phage_lysozyme2 PRK08581 TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI Feature: gene Location: 598-1029 bp Feature: domain Description: Transposase_mut Location: 625-1021 bp Feature: domain Description: Transposase_mut Location: 625-1 021 bp Feature: gene Location: 1442-2854 bp Feature: domain Description: VirD2 Location: 1445-2099 bp Feature: domain Description: VirD2 Location: 1 445-2099 bp Feature: domain Description: Streptin-Immun Location: 2537-2804 bp Feature: domain Description: Streptin-Immun Location: 2537-2804 bp Feature: gene Location: 3042-4832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3318-4122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 8-41 22 bp Feature: domain Description: Intron_maturas2 Location: 4236-4509 bp Feature: domain Description: Intron_maturas2 Location: 4236-4509 bp Feature: gene Location: 5369-5797 bp Feature: domain Description: Relaxase Location: 5402-5762 bp Feature: domain Description: Relaxase Location: 5402-5762 bp Feature: gene Location: 5784-6149 bp Feature: domain Description: MobC Location: 5970-6093 bp Feature: domain Description: MobC Location: 5970-6093 bp Feature: gene Location: 21476-21661 bp Feature: gene Location: 21731-22642 bp Feature: gene Location: 22783-24594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23047-23869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23047-23869 bp Feature: domain Description: Intron_maturas2 Location: 23938-24412 bp Feature: domain Description: Intron_maturas2 Location: 23938-2441 2 bp Feature: domain Description: HNHc Note: nucleases Location: 24412-24577 bp Feature: domain Description: HNHc Note: nucleases Location: 2441 2-24577 bp Feature: gene Location: 25159-31056 bp Feature: domain Description: N6_Mtase Location: 27163-27787 bp Feature: domain Description: N6_Mtase Location: 271 63-27787 bp Feature: domain Description: COG4646 Location: 28345-30652 bp Feature: domain Description: COG4646 Location: 28345-30652 bp Feature: gene Location: 31107-31658 bp Feature: gene Location: 38769-41573 bp Feature: domain Description: PRK06149 Location: 40197-40461 bp Feature: domain Description: PRK061 49 Location: 401 97-40461 bp Feature: domain Description: Phage_lysozyme2 Location: 40572-41082 bp Feature: domain Description: Phage_lysozyme2 Location: 40572-41 082 bp Feature: domain Description: PRK08581 Location: 41199-41535 bp Feature: domain Description: PRK08581 Location: 41 1 99-41 535 bp Feature: gene Location: 41563-42594 bp Feature: domain Description: TraC-F-type Location: 41713-42403 bp Feature: domain Description: TraC-F-type Location: 41 71 3-42403 bp Feature: gene Location: 42542-44215 bp Feature: RT Description: RVT_N Location: 42614-42854 bp Feature: RT Description: RVT_N Location: 4261 4-42854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42902-43562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42902-43562 bp Feature: domain Description: GIIM Note: maturase Location: 43631-43850 bp Feature: domain Description: GIIM Note: maturase Location: 43631 -43850 bp Feature: gene Location: 44744-46210 bp Feature: domain Description: TraC-F-type Location: 45512-45893 bp Feature: domain Description: TraC-F-type Location: 4551 2-45893 bp Feature: gene Location: 46188-46541 bp Feature: domain Description: PrgI Location: 46200-46458 bp Feature: domain Description: PrgI Location: 46200-46458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD2 (COG3843), Streptin-Immun (pfam11083), RVT-GII, Intron_maturas2 (pfam01348), Relaxase (pfam03432), MobC (pfam05713), Transposase_mut (pfam00872), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )
PRK06149 (aminotransferase), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), TraC-F-type (TIGR02746), RVT_N (pfam13655), GIIM (pfam08388), PrgI (pfam12666)