myRT

myRT report for GCA_000876365.1_ASM87636v1

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Seq: JAUB01000062.1 Streptococcus equi subsp. zooepidemicus Sz35 contig000130, whole genome shotgun sequence (2596 bp)
Overview 1 RT 1: 861-1981 bp Neighborhood of RT #1 [861, 2364] RVT-GII group_II_RT_mat Feature: gene Location: 861-1022 bp Feature: gene Location: 1030-2364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1033-1642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 033-1 642 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1849-1981 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 849-1 981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: JAUB01000090.1 Streptococcus equi subsp. zooepidemicus Sz35 contig000030, whole genome shotgun sequence (16729 bp)
Overview 1 RT 1: 3396-13238 bp Neighborhood of RT #1 [3396, 13238] KOG1000 KOG4768 RVT-GII N6_Mtase COG4646 Feature: gene Location: 3396-4739 bp Feature: domain Description: KOG1000 Location: 3675-3993 bp Feature: domain Description: KOG1000 Location: 3675-3993 bp Feature: gene Location: 4877-5674 bp Feature: domain Description: KOG4768 Location: 4886-5660 bp Feature: domain Description: KOG4768 Location: 4886-5660 bp Feature: gene Location: 5705-6655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5966-6650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5966-6650 bp Feature: gene Location: 7153-12636 bp Feature: domain Description: N6_Mtase Location: 9169-9760 bp Feature: domain Description: N6_Mtase Location: 9169-9760 bp Feature: domain Description: COG4646 Location: 10354-12481 bp Feature: domain Description: COG4646 Location: 10354-12 481 bp Feature: gene Location: 12687-13238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), RVT-GII, N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: JAUB01000091.1 Streptococcus equi subsp. zooepidemicus Sz35 contig000063, whole genome shotgun sequence (11838 bp)
Overview 1 RT 1: 3033-9934 bp Neighborhood of RT #1 [3033, 10017] Peptidase_M23 Phage_lysozyme2 TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI Feature: gene Location: 3033-5048 bp Feature: domain Description: Peptidase_M23 Location: 4470-4674 bp Feature: domain Description: Peptidase_M23 Location: 4470-4674 bp Feature: domain Description: Phage_lysozyme2 Location: 4827-4953 bp Feature: domain Description: Phage_lysozyme2 Location: 4827-4953 bp Feature: gene Location: 5045-6070 bp Feature: domain Description: TraC-F-type Location: 5195-5891 bp Feature: domain Description: TraC-F-type Location: 5195-5891 bp Feature: gene Location: 6018-7691 bp Feature: RT Description: RVT_N Location: 6090-6330 bp Feature: RT Description: RVT_N Location: 6090-63 3 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6378-7038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 78-703 8 bp Feature: domain Description: GIIM Note: maturase Location: 7107-7326 bp Feature: domain Description: GIIM Note: maturase Location: 7107-73 26 bp Feature: gene Location: 8220-9707 bp Feature: domain Description: TraC-F-type Location: 8538-9390 bp Feature: domain Description: TraC-F-type Location: 853 8-93 90 bp Feature: gene Location: 9664-10017 bp Feature: domain Description: PrgI Location: 9676-9934 bp Feature: domain Description: PrgI Location: 9676-993 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PrgI (pfam12666)