myRT

myRT report for GCA_000876755.1_Velvet_assembly

Download annotations/find similar RTs

Seq: CECR01000002.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_2_length_77450_cov_22.410316, whole genome shotgun sequence (77516 bp)
Overview 1 RT 1: 62241-72430 bp Neighborhood of RT #1 [62241, 72430] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 Feature: gene Location: 62241-62792 bp Feature: gene Location: 62829-68303 bp Feature: domain Description: N6_Mtase Location: 64854-65445 bp Feature: domain Description: N6_Mtase Location: 64854-65445 bp Feature: domain Description: COG4646 Location: 66036-68160 bp Feature: domain Description: COG4646 Location: 66036-681 60 bp Feature: gene Location: 68801-70579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69062-69854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69062-69854 bp Feature: domain Description: Intron_maturas2 Location: 69959-70190 bp Feature: domain Description: Intron_maturas2 Location: 69959-701 90 bp Feature: domain Description: HNHc Note: nucleases Location: 70355-70541 bp Feature: domain Description: HNHc Note: nucleases Location: 70355-70541 bp Feature: gene Location: 70717-72060 bp Feature: domain Description: KOG1000 Location: 70996-71311 bp Feature: domain Description: KOG1 000 Location: 70996-71 31 1 bp Feature: gene Location: 72131-72430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )

Seq: CECR01000007.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_7_length_1793_cov_663.344116, whole genome shotgun sequence (1859 bp)
Overview 1 RT 1: 2-1603 bp Neighborhood of RT #1 [2, 1794] RVT-GII GIIM Feature: gene Location: 2-151 bp Feature: gene Location: 517-1794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721-1336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 1-1336 bp Feature: domain Description: GIIM Note: maturase Location: 1390-1603 bp Feature: domain Description: GIIM Note: maturase Location: 1390-1603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)