myRT

myRT report for GCA_000877155.1_Velvet_assembly

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Seq: CECX01000005.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_5_length_90235_cov_21.150496, whole genome shotgun sequence (90303 bp)
Overview 1 RT 1: 74636-83927 bp Neighborhood of RT #1 [74636, 83935] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc SF2_C_SNF TnpV Feature: gene Location: 74636-75187 bp Feature: gene Location: 75237-80699 bp Feature: domain Description: N6_Mtase Location: 77247-77853 bp Feature: domain Description: N6_Mtase Location: 77247-77853 bp Feature: domain Description: COG4646 Location: 78429-80553 bp Feature: domain Description: COG4646 Location: 78429-80553 bp Feature: gene Location: 81197-82975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81458-82250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 458-82250 bp Feature: domain Description: Intron_maturas2 Location: 82355-82586 bp Feature: domain Description: Intron_maturas2 Location: 82355-82586 bp Feature: domain Description: HNHc Note: nucleases Location: 82751-82937 bp Feature: domain Description: HNHc Note: nucleases Location: 82751 -82937 bp Feature: gene Location: 83113-83580 bp Feature: domain Description: SF2_C_SNF Location: 83356-83503 bp Feature: domain Description: SF2_C_SNF Location: 83356-83503 bp Feature: gene Location: 83561-83935 bp Feature: domain Description: TnpV Location: 83597-83927 bp Feature: domain Description: TnpV Location: 83597-83927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SF2_C_SNF (cd18793), TnpV (pfam14198)