myRT

myRT report for GCA_000877315.1_BIG

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Seq: JTDP01000002.1 Burkholderia cepacia strain LMG 16656 NP88.Contig40, whole genome shotgun sequence (948000 bp)
Overview 1 RT 1: 139376-143959 bp Neighborhood of RT #1 [139376, 143959] D RVT-GII HipB Feature: gene Location: 139376-140446 bp Feature: domain Description: D Location: 139430-140414 bp Feature: domain Description: D Location: 1 39430-1 4041 4 bp Feature: gene Location: 140634-140930 bp Feature: gene Location: 141058-142590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141469-142159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 469-1 421 59 bp Feature: gene Location: 143162-143617 bp Feature: domain Description: HipB Location: 143171-143354 bp Feature: domain Description: HipB Location: 1 431 71 -1 43354 bp Feature: gene Location: 143744-143959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII, HipB (COG1396)

Seq: JTDP01000005.1 Burkholderia cepacia strain LMG 16656 NP88.Contig9, whole genome shotgun sequence (95661 bp)
Overview 1 RT 1: 49571-54609 bp Neighborhood of RT #1 [49571, 54785] SRAP RVT-GII COG4544 Feature: gene Location: 49571-50473 bp Feature: gene Location: 51169-52080 bp Feature: domain Description: SRAP Location: 51529-52045 bp Feature: domain Description: SRAP Location: 5152 9-52 045 bp Feature: gene Location: 52136-53668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52547-53237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 547-532 37 bp Feature: gene Location: 53770-53952 bp Feature: gene Location: 54069-54785 bp Feature: domain Description: COG4544 Location: 54174-54609 bp Feature: domain Description: COG4544 Location: 54174-54609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII, COG4544 (Uncharacterized conserved protein )

Seq: JTDP01000001.1 Burkholderia cepacia strain LMG 16656 NP88.Contig14, whole genome shotgun sequence (4098853 bp)
Overview 1 RT 1: 104462-108405 bp 2 RT 2: 691621-696987 bp 3 RT 3: 910322-919521 bp 4 RT 4: 2548455-2552031 bp 5 RT 5: 2591325-2597877 bp Neighborhood of RT #1 [104462, 108413] InsE TnpB_IS66 RVT-GII PRK09409 PRK09183 Neighborhood of RT #2 [691621, 696992] MFS_MucK Histone_HNS RVT-Retrons FIN his_ut_repres Neighborhood of RT #3 [910322, 919568] ALDH_F7_AASADH COG3547 RVT-GII GIIM MscK MFS_SV2_like Neighborhood of RT #4 [2548455, 2552063] YdaS_antitoxin RVT-GII Doc Neighborhood of RT #5 [2591325, 2597882] Gmd GDP_MD_SDR_e RVT-GII GIIM COG3547 PRK08133 Feature: gene Location: 104462-104857 bp Feature: domain Description: InsE Location: 104489-104810 bp Feature: domain Description: InsE Location: 104489-104810 bp Feature: gene Location: 104854-105186 bp Feature: domain Description: TnpB_IS66 Location: 104881-105169 bp Feature: domain Description: TnpB_IS66 Location: 104881-105169 bp Feature: gene Location: 105516-106490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105927-106446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105927-106446 bp Feature: gene Location: 106482-107330 bp Feature: domain Description: PRK09409 Location: 106485-107313 bp Feature: domain Description: PRK09409 Location: 106485-1073 13 bp Feature: gene Location: 107640-108413 bp Feature: domain Description: PRK09183 Location: 107643-108405 bp Feature: domain Description: PRK09183 Location: 107643 -108405 bp Feature: gene Location: 691621-692868 bp Feature: domain Description: MFS_MucK Location: 691711-692845 bp Feature: domain Description: MFS_MucK Location: 691711-692845 bp Feature: gene Location: 693172-693501 bp Feature: domain Description: Histone_HNS Location: 693193-693430 bp Feature: domain Description: Histone_HNS Location: 693 193 -693 43 0 bp Feature: gene Location: 693827-695176 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 694292-694928 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 694292-694928 bp Feature: gene Location: 695430-696002 bp Feature: domain Description: FIN Location: 695616-695967 bp Feature: domain Description: FIN Location: 695616-695967 bp Feature: gene Location: 696237-696992 bp Feature: domain Description: his_ut_repres Location: 696315-696987 bp Feature: domain Description: his_ut_repres Location: 6963 15-696987 bp Feature: gene Location: 910322-911833 bp Feature: domain Description: ALDH_F7_AASADH Location: 910376-911792 bp Feature: domain Description: ALDH_F7_AASADH Location: 9103 76-911792 bp Feature: gene Location: 912523-913557 bp Feature: domain Description: COG3547 Location: 912538-913501 bp Feature: domain Description: COG3 547 Location: 91253 8-913 501 bp Feature: gene Location: 913806-915095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914061-914676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914061-914676 bp Feature: domain Description: GIIM Note: maturase Location: 914736-914937 bp Feature: domain Description: GIIM Note: maturase Location: 91473 6-91493 7 bp Feature: gene Location: 915239-917701 bp Feature: domain Description: MscK Location: 915317-917660 bp Feature: domain Description: MscK Location: 9153 17-917660 bp Feature: gene Location: 918150-919568 bp Feature: domain Description: MFS_SV2_like Location: 918270-919521 bp Feature: domain Description: MFS_SV2_like Location: 918270-919521 bp Feature: gene Location: 2548455-2548709 bp Feature: domain Description: YdaS_antitoxin Location: 2548527-2548662 bp Feature: domain Description: YdaS_antitoxin Location: 2548527-2548662 bp Feature: gene Location: 2549178-2549468 bp Feature: gene Location: 2549877-2551409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2550288-2550978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2550288-2550978 bp Feature: gene Location: 2551503-2551679 bp Feature: gene Location: 2551680-2552063 bp Feature: domain Description: Doc Location: 2551686-2552031 bp Feature: domain Description: Doc Location: 2551686-255203 1 bp Feature: gene Location: 2591325-2592371 bp Feature: domain Description: Gmd Location: 2591340-2592357 bp Feature: domain Description: Gmd Location: 25913 40-25923 57 bp Feature: gene Location: 2592358-2593323 bp Feature: domain Description: GDP_MD_SDR_e Location: 2592394-2593291 bp Feature: domain Description: GDP_MD_SDR_e Location: 25923 94-2593 291 bp Feature: gene Location: 2593443-2594732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2593698-2594313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2593 698-25943 13 bp Feature: domain Description: GIIM Note: maturase Location: 2594373-2594574 bp Feature: domain Description: GIIM Note: maturase Location: 25943 73 -2594574 bp Feature: gene Location: 2594981-2596015 bp Feature: domain Description: COG3547 Location: 2594996-2595959 bp Feature: domain Description: COG3 547 Location: 2594996-2595959 bp Feature: gene Location: 2596692-2597882 bp Feature: domain Description: PRK08133 Location: 2596698-2597877 bp Feature: domain Description: PRK0813 3 Location: 2596698-2597877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), TnpB_IS66 (pfam05717), RVT-GII, PRK09409 (IS2 transposase TnpB; Reviewed), PRK09183 (transposase/IS protein; Provisional), MFS_MucK (cd17371), Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)
ALDH_F7_AASADH (cd07130), COG3547 (Transposase ), GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316), YdaS_antitoxin (pfam15943), Doc (COG3654), Gmd (COG1089), GDP_MD_SDR_e (cd05260), PRK08133 (O-succinylhomoserine sulfhydrylase; Validated)