myRT

myRT report for GCA_000877625.1_ASM87762v1

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Seq: AONA01000113.1 Vibrio parahaemolyticus 49, whole genome shotgun sequence (2726 bp)
Overview 1 RT 1: 100-2683 bp Neighborhood of RT #1 [100, 2691] RVT_N RVT-GII GIIM PRK10354 Feature: gene Location: 100-1476 bp Ori: KIT40827.1 Feature: domain Description: RVT_N Location: 103-295 bp Feature: domain Description: RVT_N Location: 1 03-295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340-967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340-967 bp Feature: domain Description: GIIM Note: maturase Location: 1027-1252 bp Feature: domain Description: GIIM Note: maturase Location: 1 027-1 252 bp Feature: gene Location: 1549-1716 bp Feature: gene Location: 2479-2691 bp Ori: KIT40826.1 Feature: domain Description: PRK10354 Location: 2482-2683 bp Feature: domain Description: PRK1 0354 Location: 2482-2683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK10354 (RNA chaperone/antiterminator CspA)

Seq: AONA01000100.1 Vibrio parahaemolyticus 49, whole genome shotgun sequence (27622 bp)
Overview 1 RT 1: 7363-13608 bp Neighborhood of RT #1 [7363, 13608] Prok-E2_A ThiF Prok-JAB ComA-like_MBL-fold RVT-Retrons Feature: gene Location: 7363-9585 bp Ori: KIT41068.1 Feature: domain Description: Prok-E2_A Location: 7393-7849 bp Feature: domain Description: Prok-E2 _A Location: 7393-7849 bp Feature: domain Description: ThiF Location: 8407-8764 bp Feature: domain Description: ThiF Location: 8407-8764 bp Feature: domain Description: Prok-JAB Location: 9151-9511 bp Feature: domain Description: Prok-JAB Location: 9151-9511 bp Feature: gene Location: 9569-10708 bp Ori: KIT41069.1 Feature: domain Description: ComA-like_MBL-fold Location: 9581-9809 bp Feature: domain Description: ComA-like_MBL-fold Location: 9581-9809 bp Feature: gene Location: 10760-12520 bp Ori: KIT41070.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10916-11537 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10916-11537 bp Feature: gene Location: 13067-13321 bp Feature: gene Location: 13342-13608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prok-E2_A (pfam14457), ThiF (pfam00899), Prok-JAB (pfam14464), ComA-like_MBL-fold (cd07731), RVT-Retrons

Seq: AONA01000026.1 Vibrio parahaemolyticus 49, whole genome shotgun sequence (16557 bp)
Overview 1 RT 1: 9202-16535 bp Neighborhood of RT #1 [9202, 16535] TnsE_C RVT-UG1 Feature: gene Location: 9202-10641 bp Ori: KIT43408.1 Feature: domain Description: TnsE_C Location: 10156-10534 bp Feature: domain Description: TnsE_C Location: 10156-1053 4 bp Feature: gene Location: 10730-10900 bp Feature: gene Location: 10913-14590 bp Ori: KIT43410.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 11525-11978 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 11525-11978 bp Feature: gene Location: 14599-15039 bp Feature: gene Location: 15192-16535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnsE_C (pfam18623), RVT-UG1