myRT

myRT report for GCA_000877765.2_ASM87776v2

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Seq: AOPE02000069.1 Vibrio parahaemolyticus 3646 contig8, whole genome shotgun sequence (307422 bp)
Overview 1 RT 1: 178112-183282 bp Neighborhood of RT #1 [178112, 183290] couple_hipB HipA_So_like RVT-Retrons Mrr_cat zf-C4_Topoisom Feature: gene Location: 178112-178447 bp Ori: RFD49259.1 Feature: domain Description: couple_hipB Location: 178181-178349 bp Feature: domain Description: couple_hipB Location: 1 781 81 -1 78349 bp Feature: gene Location: 178440-179846 bp Ori: RFD49260.1 Feature: domain Description: HipA_So_like Location: 178521-179802 bp Feature: domain Description: HipA_So_like Location: 1 78521 -1 79802 bp Feature: gene Location: 179938-180921 bp Ori: RFD49261.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 180103-180658 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 801 03-1 80658 bp Feature: gene Location: 181044-181850 bp Feature: gene Location: 182475-183290 bp Ori: RFD49262.1 Feature: domain Description: Mrr_cat Location: 182775-183105 bp Feature: domain Description: Mrr_cat Location: 1 82775-1 831 05 bp Feature: domain Description: zf-C4_Topoisom Location: 183174-183282 bp Feature: domain Description: zf-C4_Topoisom Location: 1 831 74-1 83282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT couple_hipB (TIGR03070), HipA_So_like (cd17809), RVT-Retrons, Mrr_cat (pfam04471), zf-C4_Topoisom (pfam01396)

Seq: AOPE02000001.1 Vibrio parahaemolyticus 3646 contig1, whole genome shotgun sequence (213967 bp)
Overview 1 RT 1: 204007-213692 bp Neighborhood of RT #1 [204007, 213775] DUF2384 RVT-UG1 HsdR Feature: gene Location: 204007-204246 bp Ori: RFD59466.1 Feature: domain Description: DUF2384 Location: 204094-204235 bp Feature: domain Description: DUF2 384 Location: 2 04094-2 042 35 bp Feature: gene Location: 204524-206437 bp Feature: gene Location: 206891-210757 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 207578-208106 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2 07578-2 08106 bp Feature: gene Location: 210827-213775 bp Feature: domain Description: HsdR Location: 210863-213692 bp Feature: domain Description: HsdR Location: 2 10863-2 13692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2384 (pfam09722), RVT-UG1, HsdR (COG4096)