myRT

myRT report for GCA_000878565.1_ASM87856v1

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Seq: JXUZ01000020.1 Vibrio parahaemolyticus strain 10-4298 contig20, whole genome shotgun sequence (518884 bp)
Overview 1 RT 1: 137777-144646 bp Neighborhood of RT #1 [137777, 144663] PinE RVT-Retrons Tar PRK15030 Feature: gene Location: 137777-138385 bp Ori: KIU89028.1 Feature: domain Description: PinE Location: 137789-138362 bp Feature: domain Description: PinE Location: 1 37789-1 38362 bp Feature: gene Location: 138618-139337 bp Feature: gene Location: 139347-140549 bp Ori: KIU89030.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 139491-140076 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 39491 -1 40076 bp Feature: gene Location: 141462-143099 bp Ori: KIU89031.1 Feature: domain Description: Tar Location: 141891-143097 bp Feature: domain Description: Tar Location: 1 41 891 -1 43097 bp Feature: gene Location: 143524-144663 bp Ori: KIU89032.1 Feature: domain Description: PRK15030 Location: 143545-144646 bp Feature: domain Description: PRK1 5030 Location: 1 43545-1 44646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-Retrons, Tar (COG0840), PRK15030 (multidrug efflux RND transporter periplasmic adaptor subunit AcrA)

Seq: JXUZ01000074.1 Vibrio parahaemolyticus strain 10-4298 contig74, whole genome shotgun sequence (14610 bp)
Overview 1 RT 1: 272-6801 bp Neighborhood of RT #1 [272, 6801] HsdS RMtype1_S_Eco2747I-TRD2-CR2_like RMtype1_S_Eco2747I-TRD2-CR2_like PRK04247 RVT-UG2 PinE Feature: gene Location: 272-2032 bp Ori: KIU77924.1 Feature: domain Description: HsdS Location: 287-551 bp Feature: domain Description: HsdS Location: 2 87-551 bp Feature: domain Description: RMtype1_S_Eco2747I-TRD2-CR2_like Location: 893-1154 bp Feature: domain Description: RMtype1_S_Eco2 747I-TRD2 -CR2 _like Location: 893-1154 bp Feature: domain Description: RMtype1_S_Eco2747I-TRD2-CR2_like Location: 1451-2006 bp Feature: domain Description: RMtype1_S_Eco2 747I-TRD2 -CR2 _like Location: 1451-2 006 bp Feature: gene Location: 2035-3030 bp Ori: KIU77925.1 Feature: domain Description: PRK04247 Location: 2218-2335 bp Feature: domain Description: PRK042 47 Location: 2 2 18-2 335 bp Feature: gene Location: 3651-4961 bp Ori: KIU77926.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3852-4665 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3852 -4665 bp Feature: gene Location: 5291-5881 bp Ori: KIU77935.1 Feature: domain Description: PinE Location: 5300-5861 bp Feature: domain Description: PinE Location: 5300-5861 bp Feature: gene Location: 6514-6801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdS (COG0732), RMtype1_S_Eco2747I-TRD2-CR2_like (cd17247), PRK04247 (endonuclease NucS), RVT-UG2, PinE (COG1961)