myRT

myRT report for GCA_000931955.2_ASM93195v2

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Seq: JXUR02000112.1 Photorhabdus luminescens strain NBAII Hb105 Chromous4_raw_trimmed_contig_112, whole genome shotgun sequence (13644 bp)
Overview 1 RT 1: 1439-6730 bp Neighborhood of RT #1 [1439, 6747] RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 1439-1726 bp Feature: gene Location: 1997-2155 bp Feature: gene Location: 2339-3991 bp Feature: domain Description: RVT_N Location: 2390-2633 bp Feature: domain Description: RVT_N Location: 2390-2633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2678-3323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2678-3323 bp Feature: domain Description: GIIM Note: maturase Location: 3377-3608 bp Feature: domain Description: GIIM Note: maturase Location: 3377-3608 bp Feature: domain Description: HNHc Note: nucleases Location: 3824-3980 bp Feature: domain Description: HNHc Note: nucleases Location: 3824-3980 bp Feature: gene Location: 4811-5011 bp Feature: gene Location: 5101-6747 bp Feature: domain Description: groEL Location: 5107-6730 bp Feature: domain Description: groEL Location: 51 07-6730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852)

Seq: JXUR02000288.1 Photorhabdus luminescens strain NBAII Hb105 Chromous4_raw_trimmed_contig_288, whole genome shotgun sequence (11863 bp)
Overview 1 RT 1: 1-3654 bp Neighborhood of RT #1 [1, 3654] RVT-Retrons DppF Feature: gene Location: 1-882 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43-613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43-613 bp Feature: gene Location: 886-2226 bp Feature: domain Description: DppF Location: 934-1672 bp Feature: domain Description: DppF Location: 934-1672 bp Feature: gene Location: 2623-3654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DppF (COG1124)

Seq: JXUR02000390.1 Photorhabdus luminescens strain NBAII Hb105 Chromous4_raw_trimmed_contig_390, whole genome shotgun sequence (9764 bp)
Overview 1 RT 1: 60-2237 bp Neighborhood of RT #1 [60, 2341] RVT-UG2 PRK09692 Feature: gene Location: 60-1397 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 321-1104 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3 21-1104 bp Feature: gene Location: 1434-1625 bp Feature: gene Location: 2024-2341 bp Feature: domain Description: PRK09692 Location: 2039-2237 bp Feature: domain Description: PRK09692 Location: 203 9-223 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, PRK09692 (Integrase; provisional)

Seq: JXUR02000442.1 Photorhabdus luminescens strain NBAII Hb105 Chromous4_raw_trimmed_contig_442, whole genome shotgun sequence (1920 bp)
Overview 1 RT 1: 103-1918 bp Neighborhood of RT #1 [103, 1918] RVT-GII Feature: gene Location: 103-1560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 511-1198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 511-1198 bp Feature: gene Location: 1259-1918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII