myRT

myRT report for GCA_000935945.1_Velvet_assembly

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Seq: CEKH01000010.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_10_length_81454_cov_15.289182, whole genome shotgun sequence (81512 bp)
Overview 1 RT 1: 22817-32985 bp Neighborhood of RT #1 [22817, 32985] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 22817-23116 bp Feature: gene Location: 23187-24530 bp Feature: domain Description: KOG1000 Location: 23466-23781 bp Feature: domain Description: KOG1 000 Location: 23466-23781 bp Feature: gene Location: 24668-26446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24929-25721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24929-25721 bp Feature: domain Description: Intron_maturas2 Location: 25826-26057 bp Feature: domain Description: Intron_maturas2 Location: 25826-26057 bp Feature: domain Description: HNHc Note: nucleases Location: 26222-26408 bp Feature: domain Description: HNHc Note: nucleases Location: 26222-26408 bp Feature: gene Location: 26944-32397 bp Feature: domain Description: N6_Mtase Location: 28948-29539 bp Feature: domain Description: N6_Mtase Location: 28948-29539 bp Feature: domain Description: COG4646 Location: 30130-32254 bp Feature: domain Description: COG4646 Location: 301 30-32254 bp Feature: gene Location: 32434-32985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )