myRT

myRT report for GCA_000936025.1_Velvet_assembly

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Seq: CEGO01000047.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_54_length_166753_cov_17.228956, whole genome shotgun sequence (166813 bp)
Overview 1 RT 1: 46698-55995 bp Neighborhood of RT #1 [46698, 56399] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 46698-46997 bp Feature: gene Location: 47068-48087 bp Feature: domain Description: KOG1000 Location: 47143-47338 bp Feature: domain Description: KOG1 000 Location: 471 43-47338 bp Feature: gene Location: 48120-49931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48384-49206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48384-49206 bp Feature: domain Description: Intron_maturas2 Location: 49275-49749 bp Feature: domain Description: Intron_maturas2 Location: 49275-49749 bp Feature: domain Description: HNHc Note: nucleases Location: 49749-49914 bp Feature: domain Description: HNHc Note: nucleases Location: 49749-4991 4 bp Feature: gene Location: 50171-50371 bp Feature: gene Location: 50496-56399 bp Feature: domain Description: N6_Mtase Location: 52509-53100 bp Feature: domain Description: N6_Mtase Location: 52509-531 00 bp Feature: domain Description: COG4646 Location: 53691-55995 bp Feature: domain Description: COG4646 Location: 53691 -55995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )