myRT

myRT report for GCA_000936145.1_Velvet_assembly

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Seq: CELN01000005.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_5_length_28216_cov_17.319464, whole genome shotgun sequence (28274 bp)
Overview 1 RT 1: 4787-13292 bp Neighborhood of RT #1 [4787, 13366] TnpV SF2_C_SNF RVT-GII Intron_maturas2 HNHc COG4646 N6_Mtase Feature: gene Location: 4787-5161 bp Feature: domain Description: TnpV Location: 4823-5153 bp Feature: domain Description: TnpV Location: 4823-51 53 bp Feature: gene Location: 5142-5609 bp Feature: domain Description: SF2_C_SNF Location: 5385-5532 bp Feature: domain Description: SF2_C_SNF Location: 5385-5532 bp Feature: gene Location: 5747-7525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6008-6800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6008-6800 bp Feature: domain Description: Intron_maturas2 Location: 6905-7136 bp Feature: domain Description: Intron_maturas2 Location: 6905-71 36 bp Feature: domain Description: HNHc Note: nucleases Location: 7301-7487 bp Feature: domain Description: HNHc Note: nucleases Location: 7301 -7487 bp Feature: gene Location: 8023-10989 bp Feature: domain Description: COG4646 Location: 8722-10846 bp Feature: domain Description: COG4646 Location: 8722-1 0846 bp Feature: gene Location: 10955-13366 bp Feature: domain Description: N6_Mtase Location: 12968-13292 bp Feature: domain Description: N6_Mtase Location: 1 2968-1 3292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), TnpV (pfam14198), SF2_C_SNF (cd18793), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: CELN01000036.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_40_length_38887_cov_16.549927, whole genome shotgun sequence (38945 bp)
Overview 1 RT 1: 34934-38195 bp Neighborhood of RT #1 [34934, 38195] RVT-GII TraG-D_C Feature: gene Location: 34934-35065 bp Feature: gene Location: 35071-35235 bp Feature: gene Location: 35382-37292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35691-36447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35691-36447 bp Feature: gene Location: 37303-37935 bp Feature: domain Description: TraG-D_C Location: 37396-37723 bp Feature: domain Description: TraG-D_C Location: 37396-3772 3 bp Feature: gene Location: 37953-38195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TraG-D_C (pfam12696)