myRT

myRT report for GCA_000936305.1_Velvet_assembly

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Seq: CEHC01000002.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_2_length_77397_cov_20.997456, whole genome shotgun sequence (77451 bp)
Overview 1 RT 1: 33700-43869 bp Neighborhood of RT #1 [33700, 43869] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 33700-33999 bp Feature: gene Location: 34070-35413 bp Feature: domain Description: KOG1000 Location: 34349-34664 bp Feature: domain Description: KOG1 000 Location: 34349-34664 bp Feature: gene Location: 35551-37338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35821-36613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35821 -3661 3 bp Feature: domain Description: Intron_maturas2 Location: 36718-36949 bp Feature: domain Description: Intron_maturas2 Location: 3671 8-36949 bp Feature: domain Description: HNHc Note: nucleases Location: 37114-37300 bp Feature: domain Description: HNHc Note: nucleases Location: 371 1 4-37300 bp Feature: gene Location: 37827-43268 bp Feature: domain Description: N6_Mtase Location: 39819-40410 bp Feature: domain Description: N6_Mtase Location: 3981 9-4041 0 bp Feature: domain Description: COG4646 Location: 41001-43125 bp Feature: domain Description: COG4646 Location: 41 001 -431 25 bp Feature: gene Location: 43318-43869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )