myRT

myRT report for GCA_000936795.1_Velvet_assembly

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Seq: CEIK01000001.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_1_length_89397_cov_17.091133, whole genome shotgun sequence (89451 bp)
Overview 1 RT 1: 33299-42590 bp Neighborhood of RT #1 [33299, 42598] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc SF2_C_SNF TnpV Feature: gene Location: 33299-33850 bp Feature: gene Location: 33900-39362 bp Feature: domain Description: N6_Mtase Location: 35910-36516 bp Feature: domain Description: N6_Mtase Location: 3591 0-3651 6 bp Feature: domain Description: COG4646 Location: 37092-39216 bp Feature: domain Description: COG4646 Location: 37092-3921 6 bp Feature: gene Location: 39860-41638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40121-40913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 21 -4091 3 bp Feature: domain Description: Intron_maturas2 Location: 41018-41249 bp Feature: domain Description: Intron_maturas2 Location: 41 01 8-41 249 bp Feature: domain Description: HNHc Note: nucleases Location: 41414-41600 bp Feature: domain Description: HNHc Note: nucleases Location: 41 41 4-41 600 bp Feature: gene Location: 41776-42243 bp Feature: domain Description: SF2_C_SNF Location: 42019-42166 bp Feature: domain Description: SF2_C_SNF Location: 4201 9-421 66 bp Feature: gene Location: 42224-42598 bp Feature: domain Description: TnpV Location: 42260-42590 bp Feature: domain Description: TnpV Location: 42260-42590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SF2_C_SNF (cd18793), TnpV (pfam14198)