myRT

myRT report for GCA_000936915.1_Velvet_assembly

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Seq: CELX01000006.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_7_length_130882_cov_20.044125, whole genome shotgun sequence (130944 bp)
Overview 1 RT 1: 41729-51919 bp Neighborhood of RT #1 [41729, 51919] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 41729-42028 bp Feature: gene Location: 42099-43442 bp Feature: domain Description: KOG1000 Location: 42378-42693 bp Feature: domain Description: KOG1 000 Location: 42378-42693 bp Feature: gene Location: 43580-45358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43841-44633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43841 -44633 bp Feature: domain Description: Intron_maturas2 Location: 44738-44969 bp Feature: domain Description: Intron_maturas2 Location: 44738-44969 bp Feature: domain Description: HNHc Note: nucleases Location: 45134-45320 bp Feature: domain Description: HNHc Note: nucleases Location: 451 34-45320 bp Feature: gene Location: 45856-51318 bp Feature: domain Description: N6_Mtase Location: 47869-48460 bp Feature: domain Description: N6_Mtase Location: 47869-48460 bp Feature: domain Description: COG4646 Location: 49051-51175 bp Feature: domain Description: COG4646 Location: 49051 -51 1 75 bp Feature: gene Location: 51368-51919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )